Ccar038366.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000006.1:72006803-72024635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00048 0.076 15.2 0.1 1 20 143 162 143 164 0.94 2 16 0.93 1.5e+02 4.9 0.7 1 21 171 191 171 192 0.94 3 16 0.00046 0.073 15.3 0.9 1 23 195 217 195 217 0.97 4 16 0.00085 0.14 14.5 1.7 1 23 223 245 223 245 0.98 5 16 0.00073 0.12 14.7 0.1 1 23 251 274 251 274 0.97 6 16 6.9e-05 0.011 17.9 2.4 1 23 280 302 280 302 0.97 7 16 0.0059 0.94 11.8 0.9 1 23 308 330 308 330 0.96 8 16 0.006 0.95 11.8 0.6 1 23 336 358 336 358 0.97 9 16 4.2e-05 0.0066 18.6 0.4 1 23 365 387 365 387 0.97 10 16 0.0078 1.2 11.4 3.9 1 23 392 415 392 415 0.93 11 16 5.3e-07 8.4e-05 24.6 0.9 1 23 421 444 421 444 0.97 12 16 4.1e-06 0.00066 21.7 2.1 1 23 450 472 450 472 0.98 13 16 0.00016 0.025 16.8 1.3 1 23 478 500 478 500 0.94 14 16 1.2e-05 0.002 20.2 0.4 1 23 506 528 506 528 0.99 15 16 0.00028 0.044 16.0 4.4 1 23 534 556 534 556 0.97 16 16 2.8e-05 0.0045 19.1 1.1 1 23 562 584 562 584 0.98
Sequence Information
- Coding Sequence
- ATGGATGTAGATCAGCAACAAATTAAAACTGAAGATGTACAgGACAACTGCGATATTACGCCAGAAGAAATTGTATCCGAGTGTGATGTTATGATTCCACCTTGTGAAGACAGCCTGCCACCAGTGACAGCACAGTGCGATGAGGACACATGCGATGGCCAATCAGAATCCACAACACAAGAGCAAGAAGAATTAACCTCTGATCAAGGCAATTCAAGATCTGATTTGTCGCAGAGTAATGAGAGTGCAAGTACATCGTCTGCAGCGGAAAGTAATACGCCGAAACTTAAACGCAGCAAAAGAAAATGTGTCAAAAGACAACCACCGCCACCACCACCACAACCACGTACCCTTCCTAAAAGACAAGTCAGCAAACGAAGTAAAAGGAAACGCGTGGAGACGACCGACCCTGACGATAATCCGCCGTACATTTGCGATATTTGCGATAAAGAATTCACGCTACCAATATATTTGAAAAAACATAAGGGACGCAATTGTTGCGTGAAAACGTACAAATGCGATTCGTGTACGAGCAAATTTCTAGACGCGGACGAATTGAAGGATCACGTCTGTATGAACCAATACAAATGTGATATTTGCGGCCGGGAATTTTTACAGAAGAATTACTTGAAATTGCATCGATTAGAGCACAGTGAGGAAAAACCGTATAAATGTAATATATGCCATGAACAATTCATTTTGCCGAAATATTTGAAAATGCACAAAGAAGTTCACAGCAAAGTTGAATCTTACGAATGTAATATTTGCCAGGATGAATTCATGACGAAGGATCTATTAGAAAACCATATACTAATGAGCCATACGAAAATGAAACCGTTTGAATGCGATATCTGTCATAAACGGTTTTCACTCGAACAAAACCTGACGAACCATAAATCCGTTCACAATCCAGGTCGACAATTCCAGTGCGAAGTGTGTTTGAAAAAGTTCAATGACGAGAATAAATTTAATATCCACAAAGTTATCCACGCTGGCGTTCAAGGATACCAATGCGATAAATGCCTAAAAGAATTTGTAGAAATAGAAGATTTTAAAAATCATCGCTTGCTTCACGTAAACGTCAAGTACGAATACGCTTGTAGTATATGCAATAAGAAATTCAAATCGGCGAACACGTTAGCGATCCATAAAATTTCGCACACGACCAACGCGTTCCAGTGCGACCAGTGCGGAAAGTTATTCAAAAGTTCGAGAAGTTTAAAATGTCATAAATTATCGGTGCACATCGAGGCGAAACAATTTGAATGTAATCTTTGCCAGAAACGATATTCGCAAAAAGAAAATCTAAAACGTCATATACTGATCATCCACGGCGGTATCAAACCATATCAATGCGACGTGTGCGAGAAGAAATTCAACACGCGATCGAGCCTGATAAACCACCATTTAATTCACAACAACATCAGGCCGTTTGCGTGCGATATGTGCGATAAAAAGTTCACGAATCAGAAATTTTTGGATCGTCATAAAGTTATACATAACGATGCGAAAGCGTTCCAATGCGAAATCTGCGAAAAAGAATTTTCGCAGTTGATTGTCTTGAAAAGGCATCTGTTAACGCACAGCGACGATAAACCTCACCAGTGCGAAGTGTGTCAAAAGTTTTTCAAGCGGATCGATTGTCTGAAAAGCCATATGGTCGTTCATAGTACAATTAAACCATACAAATGTGATGTCTGTCAGAAAGATTTCACATACAGGAAAGGTCTTAAGGCCCATCTCGTGAAACATTGTAATTCGGTAGTCGATTCGTTAATGCACCATATGCAGCCTACTCTAGATTTTCCCAATCtataa
- Protein Sequence
- MDVDQQQIKTEDVQDNCDITPEEIVSECDVMIPPCEDSLPPVTAQCDEDTCDGQSESTTQEQEELTSDQGNSRSDLSQSNESASTSSAAESNTPKLKRSKRKCVKRQPPPPPPQPRTLPKRQVSKRSKRKRVETTDPDDNPPYICDICDKEFTLPIYLKKHKGRNCCVKTYKCDSCTSKFLDADELKDHVCMNQYKCDICGREFLQKNYLKLHRLEHSEEKPYKCNICHEQFILPKYLKMHKEVHSKVESYECNICQDEFMTKDLLENHILMSHTKMKPFECDICHKRFSLEQNLTNHKSVHNPGRQFQCEVCLKKFNDENKFNIHKVIHAGVQGYQCDKCLKEFVEIEDFKNHRLLHVNVKYEYACSICNKKFKSANTLAIHKISHTTNAFQCDQCGKLFKSSRSLKCHKLSVHIEAKQFECNLCQKRYSQKENLKRHILIIHGGIKPYQCDVCEKKFNTRSSLINHHLIHNNIRPFACDMCDKKFTNQKFLDRHKVIHNDAKAFQCEICEKEFSQLIVLKRHLLTHSDDKPHQCEVCQKFFKRIDCLKSHMVVHSTIKPYKCDVCQKDFTYRKGLKAHLVKHCNSVVDSLMHHMQPTLDFPNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -