Ccar053256.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:14080122-14087379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4e-05 0.0055 18.8 1.6 1 23 117 139 117 139 0.97 2 14 8.1e-07 0.00013 24.0 1.9 1 23 145 167 145 167 0.98 3 14 9.3e-06 0.0015 20.6 4.4 1 23 173 195 173 195 0.98 4 14 0.0002 0.031 16.5 2.2 1 23 201 223 201 223 0.98 5 14 0.24 39 6.7 1.0 1 23 229 251 229 251 0.94 6 14 0.028 4.5 9.7 1.1 1 23 257 279 257 279 0.97 7 14 8.3e-05 0.013 17.6 1.0 1 23 285 307 285 307 0.98 8 14 4.5e-05 0.0072 18.5 1.0 1 23 313 335 313 335 0.98 9 14 3.6e-06 0.00057 21.9 3.9 1 23 341 363 341 363 0.98 10 14 6.5e-06 0.001 21.1 3.4 1 23 369 391 369 391 0.98 11 14 4.5e-05 0.0071 18.5 1.0 1 23 397 419 397 419 0.98 12 14 0.0002 0.031 16.5 0.6 1 23 425 447 425 447 0.98 13 14 9.1e-06 0.0015 20.7 0.9 1 23 453 475 453 475 0.98 14 14 3.3e-05 0.0052 18.9 6.4 1 23 481 504 481 504 0.96
Sequence Information
- Coding Sequence
- atGGAAGTTGAACTGTGTGAGTCGAAGATAAAAACTGAAGCTTTGCATACTGAAATTGAATTGAAAGCTGAATGTGGCGAAGAAATGAAAACTGGAGAAATTTCTCAGCCAGATCCAATTGCATTCGATTTTATTTCTGTGAAAGTTGAACAGgaTGCAGGGAGTTCGGAGGAGGTCTGCTCCAGTGTAGACGAATCTAATGAAGAACAGTTGTGTATTAAAAGAGACAATATTTATTGTAGTAGTGATAAGGACGGTGAATTTGGTGCGATAAATGTAGATATAAGTAACAAttctaatttaaataatcaaACCAGTCACATGTCGTCACTTTGTGATCctaagccatttaagtgtgatGTTTGTCAAAAAAGGTTTCCGTATCGAAGTACTCTGGTGAAACACTCGTTATCACATAGTGGCATGAAGCCATTTAAGTGCGATATCTGTGAAAAAGGTTTCAGACAGAAATGGCATCTACTCAATCACATGCTATCACATAGCGACGTTAAACAATTCAAATGTGATAtttgtcaaaatgaatttagACGTAAAAGTTGTTTAAATAGacacatgttatcacatagtggcgTTAAACCATTTACGTGTAACGTTTGTCAAAAGGGATTCAGTTGCAGAAGCGATTTAAATAACCATTTATTAGTACATACCGGTTCGAAACCATTTAAATGTGAATTATGTCGTAAAGAATTTTTATGGAAACGTACTCTAACCGATCACATGGTATCACATAGTGGTATTAAACGATTCAAATGTGATCTCTGTGAAAAAGAATTCTTATGGAAACGAACGCTTACGAATCATATGTTGTCACATAGTGGCGTTAAACCATTTAAATGTGATTTGTGTCAAAAAGAATTCACATGGAAAGGAAGTTTAACGACTCACATGTTATCGCATAGTGGCAAATTACCGTTTAAATGCAACGTTTGTCAAAAGGGGTTTAATCTCAAGAAATATCTGACCATTCATTTGTTAATTCATATCGGTCCTACGCCATTTAAATGCGATAAATGTCAATATGAATTTAGACATAAATCTCAATTAGCGAATCACATGTTATCACATAACGGTATTAACCGGTTCAAATGTGATTTCTGCGAAAAGGTATTCAAACGGAAATCACATCAGATCGCACACATGCTATCACATAGTGGTAAAAAACCATTTAAATGTGATATGTGTCAAAAAGAATTCACATGGAAAGGAAGTTTAAATAATCATATGTTATCGCATAGTGGTTCCGAACCATTTAAATGTAATCTATGTGAAAAAGAATTCATATGGAAAGGTAGTCTAACGACGCATATGTTGTCACATACCGGTGTTATGCCATTTAAGTGTGAAATATGCCAAAGAGAATTCAGTCTGAAAAAACTTCTGAATAGTCACATGTTAATACATAGCAATGTTAAgccatttaaatgtaatttatgtaaACATGAATTCAGGCGGAAATCTCATCTAAGTAAACACATGTTGTTATTACATAGTGATACTTAG
- Protein Sequence
- MEVELCESKIKTEALHTEIELKAECGEEMKTGEISQPDPIAFDFISVKVEQDAGSSEEVCSSVDESNEEQLCIKRDNIYCSSDKDGEFGAINVDISNNSNLNNQTSHMSSLCDPKPFKCDVCQKRFPYRSTLVKHSLSHSGMKPFKCDICEKGFRQKWHLLNHMLSHSDVKQFKCDICQNEFRRKSCLNRHMLSHSGVKPFTCNVCQKGFSCRSDLNNHLLVHTGSKPFKCELCRKEFLWKRTLTDHMVSHSGIKRFKCDLCEKEFLWKRTLTNHMLSHSGVKPFKCDLCQKEFTWKGSLTTHMLSHSGKLPFKCNVCQKGFNLKKYLTIHLLIHIGPTPFKCDKCQYEFRHKSQLANHMLSHNGINRFKCDFCEKVFKRKSHQIAHMLSHSGKKPFKCDMCQKEFTWKGSLNNHMLSHSGSEPFKCNLCEKEFIWKGSLTTHMLSHTGVMPFKCEICQREFSLKKLLNSHMLIHSNVKPFKCNLCKHEFRRKSHLSKHMLLLHSDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -