Ccar053240.2
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:13810486-13815894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2e-05 0.0035 19.4 0.7 1 21 294 314 294 315 0.95 2 13 4.9e-06 0.00078 21.5 0.8 2 23 323 344 322 344 0.97 3 13 1.7e-07 2.8e-05 26.1 0.7 1 23 350 372 350 372 0.98 4 13 9.1e-05 0.015 17.5 2.2 1 23 378 400 378 400 0.98 5 13 0.0012 0.19 14.0 1.3 1 23 406 428 406 428 0.98 6 13 8.9e-06 0.0014 20.7 0.2 1 23 434 456 434 456 0.98 7 13 0.00012 0.018 17.2 0.6 1 20 462 481 462 484 0.93 8 13 0.00046 0.073 15.3 1.9 1 23 490 512 490 512 0.98 9 13 1.4e-06 0.00023 23.2 1.0 1 23 518 540 518 540 0.97 10 13 0.00029 0.046 15.9 3.9 2 23 547 568 546 568 0.97 11 13 1.2e-05 0.0018 20.3 0.6 1 23 574 596 574 596 0.98 12 13 1.2e-06 0.00019 23.4 0.4 1 23 602 624 602 624 0.99 13 13 0.00057 0.091 15.0 5.1 1 23 630 652 630 652 0.98
Sequence Information
- Coding Sequence
- atGAGTGTTCGAGAATATTACAAAACTTTCAAAACGCAACTTGCAAAATACGACGCACCAATACTGACTCTCAGAGACAAGAACGGTAAAATGGCCCACAACAACAGGGACAATGCTGAGATCCTAGCGGATTCTTTCAGCAGACTTCTTAACTGCGAGGACCCCGAAGAACTTTTTGGAATAGACACATTCACAGACATAAAGACCAAACCAGAACACATACTCCCACCAACTTTCGAGGAAGTCAAACAGGCAATTAAGGAAATGAAAAACAAGAGCTGCGGGGAAGACCTAACCAGAACAGAAATCTGGAAGTACGCGCACGAGAACGTgcaaaagaaattacataaaaaattcggGGAAATTTGGGAcgctgaaaaactgccagaccactGGACAAATGCAATCATATGTCCACTACATAAAAAAGGTCCAAGAACAAATCCAGACAATTACAGAGGTATTTCATTGCTtgattgtacgtacaaaattttatCTAGAGTAATATATAACAGGGTCAGGGAACAACTGGATCACGAACTTGGGGAATATCAGGGAGGATTTAGATCCTGGCGAAGCTGTGCAGATCAGGAATCGAATGTGGAGAATAGAAAATTGGACTCTGGTAAAATTTCTGAGTTGTATCCGATTGAACACAATATTGAGTTTGTGAAAATGGAACAGGATGCAAGCGGTTGTGAAGAGGTTGATTTTGATCCAGACGAATCGAGTGGGCCACCGTTGTGCGTTAATGGAGAGCTTAGCTGTGGTAGTGGTCTTGAAGACGATGAATGTAGTGCAACTCTTAATATCATAAGCAGTGATCGTGAATTAAGTATCCAGACCGGGCGTAAGGTGTCACATAGTGGTCCTAAGCCGTATAAATGCGACATCTGTCGAAAAGAATTCGTACGAAAAGTATATCTAACAAAACACTTATCATCACGCAGTTGTGCGCAGCCGATCAAGTGTAATATTTGTCAAAAAGAGTTTAGTTCCAGAAGTAATATGGTCAGTCATTTATTGACTCACACCAGCAATAAACCGTTTAAGTGTAATTACTGCGATAAAGGATTTACGGCCAGAAGTAATTTGACGATTCACATGTTAATACATAGCGGTTCTAAACCGTTCAAATGCGATCTGTGCGAAAACGAATTCCGACGGAAAGAACATCTGACCGGTCATATGTTATCGCATACCGGTTCAAAACCGTTCAAGTGCGATTTATGTCGGAAAGAATACCGGTGGAAAAACGATCTAACCAGGCACATTTTATCGCACAGCGATGTTAAACCGTTTGAGTGTAGCGTTTGCCAAAAAGGATTCGCTACGAACCGCGAATTAATACTTCACATGTCGATGCATACGGGCGTTGTGCCGTTTAAATGCGATTTCTGCCAGAAAGGATTCGTTACGAACCGCGAATTACAACTTCACATGCCGGTACATACGAACGCTAAGCCATTTAAGTGTAATTTGTGTCAGAAGGGATTCAAGTGGAAAAATGATGTGACCAAGCATATGCGATTACATAGCGGTGTTAAACCGTTTATATGCGATAAATGCGAAAAGGGATTCAGTAGAAAACAGGATTTGACCAGGCACATGGTATCGCACACCGGTGATAAACCACTTAAATGTAATATATGTCAAAGTAGATTTAGTCACAAAACGTATTTGAACACGCATTTGTTAACACATAGCAATAGTAAACAATTCAAGTGCGATATTTGCCAAAAAGAATTCGCTCTAAAATCTTATCTGAACTCGCATTTGTTAATTCATAGCGATACTAAGCCGTATAAATGTGATATCTGCCAAAAGGCGTTCGCTCTAAAATCTTATCTCAATGCCCACTTGTTAACACATAACGGTACTAAACCGTTTAAATGCAATCTGTGTAAAAATGAATTTAGAAAAAGATCTCTTCTATGTAAGCACATGTTGTTACATAGTAGTGATgagaaataa
- Protein Sequence
- MSVREYYKTFKTQLAKYDAPILTLRDKNGKMAHNNRDNAEILADSFSRLLNCEDPEELFGIDTFTDIKTKPEHILPPTFEEVKQAIKEMKNKSCGEDLTRTEIWKYAHENVQKKLHKKFGEIWDAEKLPDHWTNAIICPLHKKGPRTNPDNYRGISLLDCTYKILSRVIYNRVREQLDHELGEYQGGFRSWRSCADQESNVENRKLDSGKISELYPIEHNIEFVKMEQDASGCEEVDFDPDESSGPPLCVNGELSCGSGLEDDECSATLNIISSDRELSIQTGRKVSHSGPKPYKCDICRKEFVRKVYLTKHLSSRSCAQPIKCNICQKEFSSRSNMVSHLLTHTSNKPFKCNYCDKGFTARSNLTIHMLIHSGSKPFKCDLCENEFRRKEHLTGHMLSHTGSKPFKCDLCRKEYRWKNDLTRHILSHSDVKPFECSVCQKGFATNRELILHMSMHTGVVPFKCDFCQKGFVTNRELQLHMPVHTNAKPFKCNLCQKGFKWKNDVTKHMRLHSGVKPFICDKCEKGFSRKQDLTRHMVSHTGDKPLKCNICQSRFSHKTYLNTHLLTHSNSKQFKCDICQKEFALKSYLNSHLLIHSDTKPYKCDICQKAFALKSYLNAHLLTHNGTKPFKCNLCKNEFRKRSLLCKHMLLHSSDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -