Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000015.1:13080812-13095021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.7e-05 0.0043 19.2 2.1 1 23 748 770 748 770 0.98

2 14 0.00031 0.049 15.9 1.8 1 23 776 798 776 798 0.98

3 14 6.7e-05 0.011 17.9 1.2 1 23 804 826 804 826 0.97

4 14 0.0013 0.21 13.8 0.6 1 23 832 854 832 854 0.98

5 14 3.9e-05 0.0062 18.7 0.8 1 23 860 882 860 882 0.99

6 14 2.6e-05 0.0041 19.2 2.9 1 23 888 910 888 910 0.98

7 14 8.8e-06 0.0014 20.7 0.4 1 23 916 938 916 938 0.98

8 14 0.00018 0.028 16.6 4.0 1 23 944 966 944 966 0.97

9 14 1.2e-06 0.00019 23.5 0.8 1 23 972 994 972 994 0.97

10 14 6.7e-06 0.0011 21.1 1.4 1 23 1000 1022 1000 1022 0.99

11 14 7.7e-05 0.012 17.8 2.9 1 23 1028 1050 1028 1050 0.99

12 14 6.9e-05 0.011 17.9 3.6 1 23 1056 1078 1056 1078 0.98

13 14 4.6e-06 0.00074 21.6 4.4 1 23 1083 1105 1083 1105 0.99

14 14 4.1e-05 0.0065 18.6 2.3 1 23 1109 1131 1109 1131 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.7e-05	0.0043	19.2	2.1	1	23	748	770	748	770	0.98
2	14	0.00031	0.049	15.9	1.8	1	23	776	798	776	798	0.98
3	14	6.7e-05	0.011	17.9	1.2	1	23	804	826	804	826	0.97
4	14	0.0013	0.21	13.8	0.6	1	23	832	854	832	854	0.98
5	14	3.9e-05	0.0062	18.7	0.8	1	23	860	882	860	882	0.99
6	14	2.6e-05	0.0041	19.2	2.9	1	23	888	910	888	910	0.98
7	14	8.8e-06	0.0014	20.7	0.4	1	23	916	938	916	938	0.98
8	14	0.00018	0.028	16.6	4.0	1	23	944	966	944	966	0.97
9	14	1.2e-06	0.00019	23.5	0.8	1	23	972	994	972	994	0.97
10	14	6.7e-06	0.0011	21.1	1.4	1	23	1000	1022	1000	1022	0.99
11	14	7.7e-05	0.012	17.8	2.9	1	23	1028	1050	1028	1050	0.99
12	14	6.9e-05	0.011	17.9	3.6	1	23	1056	1078	1056	1078	0.98
13	14	4.6e-06	0.00074	21.6	4.4	1	23	1083	1105	1083	1105	0.99
14	14	4.1e-05	0.0065	18.6	2.3	1	23	1109	1131	1109	1131	0.99

Sequence Information

Coding Sequence: ATGCCACGAAGCAAATCAGGGAAAAAACGGGAACATATTGATCCTGAAAACATTAAGAAGGCAATAGAAGCCGTTTGTGCTGAAGGAGGAAGAAGAATATCAATTAGAGAATCATGTAAAGTGTTTAACGTCAAATTTACAACATTAGTTCGACATTTAAAAGCTTTTAAGAATTCTGGAAAAGAAGAATTCCACTATGATGTTCGATATGATACAAGAAAAGTATTTTCTGAAAAAGAAGAGCTCTGTTTAGTAGAATATATAAACAAAGTGGCAAAGATGAATTACGGTTTGACTAAGAAAGGAGTTCGGGTTCTGGCTTATAAGTTTGCTGTTGCCAATAATAAAAATCGACCTGTGAAATGGGACGTCGAACAAACAGCTGGAGAAGAATGGATGAGACTGTTTATGGGAAGGCATGCTAAAAAATTATCTATTAGAAAGCCAGAAAAGACTAGTTTGTCGAGAGCAACAGCTTTTAACCCTACTAATGTTGAAACATTCTTTAAAAACCTTGAAGAGGCACATTTGAGATTAGGCCCATTCCCACCTCATCGTATTTGGAATCAGGATGAAACTGGACTAACGACTGTCCAGAATCCAAGCAAAATTGTGGCCCCAAAAGGCTTAAAGCAGATAGGAAGTGTCACTTCAGGTGAACGAGGTCACCTTGTAACATTGTCTGCTTGCATAAGTGCTATCGGTAATCACATCCCTCCCATGCTAATCTTTCCTAGGGTTAACTTTAAGGAATACATGCTTAATGGTGCACCTCCTGGGACTATTGGTGGAGCCAATCCATCAGGATGGTCCAATGAATGTTTGTATGTGAAGTTCATGGATCACTTCATAGCTCATGTAAAACCATCACGAGATGAACGTGTTTTATTGATAGTCGATAATCATGAAACACATTTATCTGTTGAAGTTATTGAAAAAGCATCAGCAGCAGGTGTAGTTATGCTCACATTTCCGCCTCATACATCGCACAGATTGCAACCACTTGATGCAACTGTGTATTCATCACTGAAAACCTTCTACAACCAAGCTGTTGACcgttggctattaaataaccctggaaaaacttttaacatttataatattgCAGAAATAGTTGGTCATATTTATTCTAAGGCATTCAGTACTAGTAATATTGTTAGTGGTTTTATGAAAACAGGAATTTATCCATTTAATAGACAAATATTTTCAGAAGAGGATTTTCTGGGTTCTTATGTTTCTGATCGTCCAAACCCTACAGACAATACTATAGCTATTGTGACTGATGCTCATGAAAGGGAGGAAGAGCCGTCTACTTCAGCTGTTACACCAAACCAGAATAAAATCAGTTCCAATGCTTTTGTTTCTCCAGAGGATGTTCAGCCTTACCCGAAGGGAACAGCAAGGAAAACTAACAGACGTGGTAGAAAATGCGGACGAAGCAAAATAGTAACGGATACTCCTGAAAAGGAAGAGATAAGAAGAGAAAAAGGTAAGAAAAGAGGCTTATTGAAGACAAAGACTACTAAACAttctgcaaataataaaaaaacccagCGTAAAGCAAGgaaatatttagtttttgaaagTGACTCTGAAAGTGATGATCAGGTGGCTGTATCTGAAGGTGATGATTCAGATAACGATGGGGACCTATTAGAAGAAATTAACGCTCAATTAACTGATGCACAAGAAGAGCTTGAATTAGAAAGACCTAGTTTGAATAATGGCGATTATGTTCTTGTacagtttccaaaaaaaaaaggATTAACTGAACACTATGTTGGGAGAATTATTTCACAAGATTTCGGTGGGTTTGAATTCAAAATACAGTTTTTGAAACGTATTGGAATGAGtagcaaatttttaattgaaacagaAGAAACATTCGATGTAAATGAGTcagatattttagtaaaattgacTAAACCAACAGAATGCAGTGGCTCAGCTCGAGAAGTGAAGGTTGAGCAAGAAGACTTAGATCCTGGTGATATTTCTCAGCCAGATCCAATCGGATTTGATTTTGTTTCTGTGAAAGTGGAACAGGATGCGAGTGGTTTTGAAGAGGTCGATTCTAAGCTAGACAAATCTACTGGGGAACTGTTGTGTATTAATAAAGACTATAATTATATTAGTGGCGATAAGGAAAGGGAGTGTACGGCGACGTGTGTCACCGTAGATGGTGATTCTACATTAAGTAACCAGACTAGTTACGTGGTAACACATAACGGTGGTGAACCATTTCAGTGCGATATCTGTCGAAAGAGATTTAGACGCGAAAGATATCTGACCAGTCACTTATCGATACATAGCGGTATTAAACCGTTCAAATGCGATATCTGTCGAAACGAATTCAGATTGAAATCGCAACTGACGTATCATATGTTATCGCATAATGATGTGAAACCGTTTACGTGCGATATCTGTCGAAAAGGATTCACTCGGAGAAACGATCTAAGTAAGCACTCGTTAATACATACCGGTGTTAAACCGTTCAAATGCGATATATGTCAAAACGAATTCAGACTGAAACCTCAACTAAGTCTGCACATGTTATCGCATAGTAGTCCGATGCCATTTCAATGCGATATCTGTCAAAAACAATTTCCGATTAGAAGTTATCTGACCAGTCACTTGTTAACGCATAGCGACGATAAACAATTCAAGTGCGATTCGTGTCAGAAAGAATTCAGACATAAATCTGCGTTAACGACGCATTTGTTAGTACATAACGGTGCCAAAGCGTTCAAGTGTGATGTGTGCCAAAAAGAATTCAGTCGTAAAAATGATTTGGCACTCCATTTGTTAATACATAGCGACGCTCGGCCATTTAAATGCGATTTTTGTCAGAATGTTTTCAGACAAAGGTCTCATCTATCGAGACATTTGTTATTGCATAGCGGTGCGAAACCATTTAACTGCGATATATGTCAGAAAGGGTTTCGACAGAAATCGACTTTAGCTAGACATATGTTATTACATACCGATGATAAACCGTTTAAGTGTAATTCGTGCGAAAAAGCGTTCAGAGAGAAATCACTTTTAACGATGCACATGTTAACGCATAACGGTCCTTGGCCATATAAATGCGAGTTGTGCGATAAACGATTCGTATGGAAACATAGTCTATCGAGACACATGTTAACGCATAGCGCGTCTAAACTATTCAAATGTAATTCGTGCGAAAATGAATTTAAACAGAAATCGCATCTAGCGAAACATATGTTATCGCATTGCGCTAAGCCATTTAAATGTAATGTATGTGAAAAGAAATTCAGTCACAAAAGTTATCTTAATCAACATGTTTTAACGCATTCGAGGCCATTTAAATGCGATTTGTGTCGGAAAGAATTCGTACGGAAATCTCGGTTGAGCGATCACATGAAATCGCATAATCGTGTTAAAAAACCGTTGAAACGTCATAACACTtga
Protein Sequence: MPRSKSGKKREHIDPENIKKAIEAVCAEGGRRISIRESCKVFNVKFTTLVRHLKAFKNSGKEEFHYDVRYDTRKVFSEKEELCLVEYINKVAKMNYGLTKKGVRVLAYKFAVANNKNRPVKWDVEQTAGEEWMRLFMGRHAKKLSIRKPEKTSLSRATAFNPTNVETFFKNLEEAHLRLGPFPPHRIWNQDETGLTTVQNPSKIVAPKGLKQIGSVTSGERGHLVTLSACISAIGNHIPPMLIFPRVNFKEYMLNGAPPGTIGGANPSGWSNECLYVKFMDHFIAHVKPSRDERVLLIVDNHETHLSVEVIEKASAAGVVMLTFPPHTSHRLQPLDATVYSSLKTFYNQAVDRWLLNNPGKTFNIYNIAEIVGHIYSKAFSTSNIVSGFMKTGIYPFNRQIFSEEDFLGSYVSDRPNPTDNTIAIVTDAHEREEEPSTSAVTPNQNKISSNAFVSPEDVQPYPKGTARKTNRRGRKCGRSKIVTDTPEKEEIRREKGKKRGLLKTKTTKHSANNKKTQRKARKYLVFESDSESDDQVAVSEGDDSDNDGDLLEEINAQLTDAQEELELERPSLNNGDYVLVQFPKKKGLTEHYVGRIISQDFGGFEFKIQFLKRIGMSSKFLIETEETFDVNESDILVKLTKPTECSGSAREVKVEQEDLDPGDISQPDPIGFDFVSVKVEQDASGFEEVDSKLDKSTGELLCINKDYNYISGDKERECTATCVTVDGDSTLSNQTSYVVTHNGGEPFQCDICRKRFRRERYLTSHLSIHSGIKPFKCDICRNEFRLKSQLTYHMLSHNDVKPFTCDICRKGFTRRNDLSKHSLIHTGVKPFKCDICQNEFRLKPQLSLHMLSHSSPMPFQCDICQKQFPIRSYLTSHLLTHSDDKQFKCDSCQKEFRHKSALTTHLLVHNGAKAFKCDVCQKEFSRKNDLALHLLIHSDARPFKCDFCQNVFRQRSHLSRHLLLHSGAKPFNCDICQKGFRQKSTLARHMLLHTDDKPFKCNSCEKAFREKSLLTMHMLTHNGPWPYKCELCDKRFVWKHSLSRHMLTHSASKLFKCNSCENEFKQKSHLAKHMLSHCAKPFKCNVCEKKFSHKSYLNQHVLTHSRPFKCDLCRKEFVRKSRLSDHMKSHNRVKKPLKRHNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -