Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000015.1:12797342-12802629[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1e-06 0.00016 23.6 1.1 1 23 92 114 92 114 0.97

2 19 0.0037 0.58 12.5 2.2 1 23 120 142 120 142 0.98

3 19 0.0012 0.2 14.0 3.3 1 23 148 170 148 170 0.98

4 19 0.00021 0.033 16.4 7.3 1 23 176 198 176 198 0.98

5 19 8.3e-05 0.013 17.6 4.6 1 23 204 226 204 226 0.98

6 19 0.00042 0.066 15.4 0.1 1 23 232 254 232 254 0.98

7 19 5.5e-05 0.0088 18.2 1.1 1 23 261 283 261 283 0.99

8 19 0.0008 0.13 14.5 2.0 1 23 289 311 289 311 0.99

9 19 0.0013 0.21 13.9 4.4 1 23 317 339 317 339 0.99

10 19 0.00041 0.064 15.5 4.9 1 23 345 367 345 367 0.98

11 19 6.6e-05 0.011 17.9 1.1 1 23 374 396 374 396 0.98

12 19 5.2e-05 0.0083 18.3 1.0 1 23 403 425 403 425 0.97

13 19 3e-05 0.0047 19.0 2.6 1 23 431 453 431 453 0.98

14 19 0.00012 0.019 17.1 0.9 1 23 459 481 459 481 0.98

15 19 0.00054 0.085 15.1 3.0 1 23 487 509 487 509 0.98

16 19 0.00049 0.079 15.2 1.7 1 23 515 537 515 537 0.98

17 19 6.9e-05 0.011 17.9 0.5 2 23 544 565 543 565 0.97

18 19 0.025 4 9.8 1.3 1 23 571 593 571 593 0.97

19 19 0.0014 0.23 13.7 1.5 1 23 599 622 599 622 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1e-06	0.00016	23.6	1.1	1	23	92	114	92	114	0.97
2	19	0.0037	0.58	12.5	2.2	1	23	120	142	120	142	0.98
3	19	0.0012	0.2	14.0	3.3	1	23	148	170	148	170	0.98
4	19	0.00021	0.033	16.4	7.3	1	23	176	198	176	198	0.98
5	19	8.3e-05	0.013	17.6	4.6	1	23	204	226	204	226	0.98
6	19	0.00042	0.066	15.4	0.1	1	23	232	254	232	254	0.98
7	19	5.5e-05	0.0088	18.2	1.1	1	23	261	283	261	283	0.99
8	19	0.0008	0.13	14.5	2.0	1	23	289	311	289	311	0.99
9	19	0.0013	0.21	13.9	4.4	1	23	317	339	317	339	0.99
10	19	0.00041	0.064	15.5	4.9	1	23	345	367	345	367	0.98
11	19	6.6e-05	0.011	17.9	1.1	1	23	374	396	374	396	0.98
12	19	5.2e-05	0.0083	18.3	1.0	1	23	403	425	403	425	0.97
13	19	3e-05	0.0047	19.0	2.6	1	23	431	453	431	453	0.98
14	19	0.00012	0.019	17.1	0.9	1	23	459	481	459	481	0.98
15	19	0.00054	0.085	15.1	3.0	1	23	487	509	487	509	0.98
16	19	0.00049	0.079	15.2	1.7	1	23	515	537	515	537	0.98
17	19	6.9e-05	0.011	17.9	0.5	2	23	544	565	543	565	0.97
18	19	0.025	4	9.8	1.3	1	23	571	593	571	593	0.97
19	19	0.0014	0.23	13.7	1.5	1	23	599	622	599	622	0.94

Sequence Information

Coding Sequence: atgggtaaggacgtgttaacaccttctgagTTTTTGaaaattgaatatgaagacgacGACACTGAAGAACCTTCCGAGTCAGAACCGGTTGCGTGCGATTTTGAGTTTGTGAAGGTGAAACAGGATTCACGCAGTTCTGAAGAGATCGATTCTAATTCAGACAAATCTAGTGAGGAACTATTAACCATGAATAGAGACTGTAGTTCTGTTAGCGGCCATCGAGACAGTGCACGTGAAACAACCGATATTAACATAAGTGGCGATAATAAGCTATTTAAGTGCGATATCTGTGGGAAGGGATGTAATCGCAGAAGCGACCTGAACAAGCATATTGTAATACATAGTGTTACTAAGCGATTCAAATGCGATTTGTGTCGAAAAGAATTCAGATGGAAACATGTTCTAACCGCTCACATGTTATCGCACAGCGTTGTAAAGCCATTTAAGTGCGATTTATGTCAGAAACGATTCAAATGGAACCATTCGTTAACCACTCACTTGTTAATacatagtggtgctaagccatttaaaTGCGATTTGTGTCGACGCGAATTTAGACGGAAATGTCATCTGAATAGTCATATGTTATCGCATAACGGTGTTAAACGATTTAAGTGTGATTTTTGTCTGAAGAAATTTAGACGGAAAGCGCATTTAGACAAACATATGTTATTACATAACGGTGTtaagccatttaagtgtgattCGTGTGGACAGGAATTCAGATGGAATTATGCTCTAATCGCTCATATGTTGTCACATAACGATGATGtcaagccattcaagtgtgatttgtgtcgaAAAGAGTTCAGTGAAGAATCGCTTTTCACTGATCACATGATGTCACATAGCGATGTCAAAtcatttaagtgtgatttgtgtcacAATGAATTTAGTGAGGAATCGCTTTTCACCGATCACATGATGTCACATAGCGATGTCAAAtcatttaagtgtgatttgtgtcacAATGAATTTTGTGACGAATCGCTTTTCACCGATCACATGATGTCACATAGCGACGTCAAATCATTTAAGTGTAATTTTTGTCCTAACGAGTTTAGAAAGAAATCTCATTTTACCAGTCACATTTTATCACATAATGATATGAAGAAGCCATTTAAGTGCGAATTGTGTCCGAGTGAATTTAGCGAGAAATCTCATTTAACCGATCACATTTTATCACATAATAATTACGTTAAGAGATTTAAGTGTGATTTTTGTCGAAAGGAATTCGAACAGAAACGTGCTCTAACCGCTCACATATCGTTACATAATGGCGATAAGCCGTTTGAATGTGGTATCTGCCATAAACGATTCAGTCTGAAAAAATATCTGACCAACCATTTGTTAATACATAACGATActaagccatttaagtgtgatttgtgtcaaaAGGAATTCACATGGAGATCCGGTCTGACCACTCACATGTTATCGCATAGCAGTGTTAAGCCATTTAAATGCGATATCTGCGATAAGGAATTCAATTGCAGAGCGCATCTGAATAGTCACTTGATTGTACATAACGATGCTAAAGAATTTAAATGCGATTTGTGTCGAAAGGAATTCAGATGGAAAACCGAGCTGACCAGGCATTTGTTATCGCATGGCGGCACCAAGCCGTTAAAATGCGATCTATGTGGAAAGGAATTCAGATGGAAATCCGGTTTGACCACGCACATGTCATCGCATAGCGGTATTAAACCATTTAAATGTGAAGTTTGCCGAAAGGAATTCGGTTGCAGGGCGTACCTCAATAGTCACTTAGCTGTACATAGCGACATTAAGGAATTTAATTGTGATTTTTGCCGGAAGGAATTCAGATGGAAATCCGAGCTAACCAGGCACATTTCGTTGTCACACACTGGTGTTATCTCATGA
Protein Sequence: MGKDVLTPSEFLKIEYEDDDTEEPSESEPVACDFEFVKVKQDSRSSEEIDSNSDKSSEELLTMNRDCSSVSGHRDSARETTDINISGDNKLFKCDICGKGCNRRSDLNKHIVIHSVTKRFKCDLCRKEFRWKHVLTAHMLSHSVVKPFKCDLCQKRFKWNHSLTTHLLIHSGAKPFKCDLCRREFRRKCHLNSHMLSHNGVKRFKCDFCLKKFRRKAHLDKHMLLHNGVKPFKCDSCGQEFRWNYALIAHMLSHNDDVKPFKCDLCRKEFSEESLFTDHMMSHSDVKSFKCDLCHNEFSEESLFTDHMMSHSDVKSFKCDLCHNEFCDESLFTDHMMSHSDVKSFKCNFCPNEFRKKSHFTSHILSHNDMKKPFKCELCPSEFSEKSHLTDHILSHNNYVKRFKCDFCRKEFEQKRALTAHISLHNGDKPFECGICHKRFSLKKYLTNHLLIHNDTKPFKCDLCQKEFTWRSGLTTHMLSHSSVKPFKCDICDKEFNCRAHLNSHLIVHNDAKEFKCDLCRKEFRWKTELTRHLLSHGGTKPLKCDLCGKEFRWKSGLTTHMSSHSGIKPFKCEVCRKEFGCRAYLNSHLAVHSDIKEFNCDFCRKEFRWKSELTRHISLSHTGVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -