Ccar058509.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:828332-855616[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3 2.1e+02 4.4 0.1 2 14 268 280 267 283 0.89 2 20 5.6e-05 0.0088 18.2 2.6 1 23 479 501 479 501 0.98 3 20 0.00066 0.1 14.8 2.6 1 23 507 529 507 529 0.97 4 20 8.3e-05 0.013 17.6 1.4 1 23 535 557 535 557 0.99 5 20 0.00014 0.023 16.9 3.8 1 23 563 585 563 585 0.97 6 20 3e-05 0.0048 19.0 0.6 2 23 592 613 591 613 0.95 7 20 8.2e-05 0.013 17.7 3.9 1 23 619 641 619 641 0.99 8 20 8.3e-06 0.0013 20.8 0.7 1 23 647 669 647 669 0.98 9 20 0.033 5.3 9.5 1.2 1 23 675 697 675 697 0.97 10 20 0.012 1.9 10.8 0.0 5 21 707 723 705 724 0.92 11 20 0.0033 0.52 12.6 2.7 1 23 731 753 731 753 0.98 12 20 0.047 7.4 9.0 1.7 1 23 759 781 759 781 0.97 13 20 1.6e-05 0.0026 19.9 0.3 1 23 787 809 787 809 0.97 14 20 5.7e-05 0.009 18.2 2.9 1 23 815 837 815 837 0.98 15 20 3.8e-05 0.006 18.7 1.3 1 23 843 865 843 865 0.98 16 20 9.3e-05 0.015 17.5 1.5 1 23 871 893 871 893 0.97 17 20 0.00019 0.03 16.5 0.6 1 21 899 919 899 920 0.95 18 20 0.00021 0.033 16.4 0.5 1 23 928 950 928 950 0.98 19 20 0.0031 0.49 12.7 2.8 1 23 956 978 956 978 0.98 20 20 6e-05 0.0096 18.1 2.0 1 23 984 1006 984 1006 0.98
Sequence Information
- Coding Sequence
- ATGAATGTGCCGTCAACAAGTTTGTCTGATTCTACGTTCGACGATCAGGGAGTAGTGATTTCTCCAGCTGACATAAATCGTATGAATAAgactaaaagaagaaaaacaaatccTGCTGAATGGAAGGATCCAAAACGAAAGCGACTGAGAGATGCTGGCAAAGAGTATATCAGTAAAAGAGGTAAGATTGTTAAGGCAAGAATACCTCCACCTATTAACTTTGACTGTGGTTGCAAACAACTATGCTGTAAGAAATTAAgttatgaaaaaattttgtcTAATTTTAATCAGTATTATAAGTTAACGTATGATGAACAATCCCTATTTTTAACGAAATGTGTGAATTTAAAAGAACCAGTTCGAAGAAGGAAGGGAAAGACAGATGCAACTTCTAGAAAATTGGCTACTTTTAAATATAGTATAGAGAATgaggaaatttgtaaaaaaatgttgttaagtGTTTTTCAAATTTCTTCTAGACGCATTCAGACACTGCAGAATAATTTAAAAGATGGTAATTTTTCTCACAAAGATCAGCGTGGGAGGCATCTAAATAGACCTCACGCAAAAAACAGTGACGTTAAAAGTTTAGTTGCTGGTCATATTGATTCATTTCCTCGACAACCAAGTCACTACAGTAGAGACAAATCGAAAAATCGAGAGTATTTATCTTCAGATTTATCCCTCGCTAAAATGTATCGATTATTTAAACAGAAATACCCGAACGTGGAAGTCAgcaaaacattttatcaaaaggttttctatgaaaaaaattataaaattggagTTCCTAGAAGTGATACCTGTAAACATTGTGATTTATTATTTAGTAGACTCAGTGCTGCCGAAAATGacgaagaaagaaagaaaatcgAACACGAAAGTTTACTGCATCATTTCAAAGCCGATGTAGCATACAAGTCGTTAAAAGAAGACGAAGCAACAGCAAAAACTAATTCTAACTATGTCGTGCTTTGTGTTGACCTACAGCAAGTGTTATTTTGTCCAACTCTCAGTCATTCCTCAATGTACTACCAAAGGCAGCTATCTTCGTACAATTTTGCTGAAATTAAAGTTGAGCGTGAAGACGACTTGGACACTGATGGAATTTCTCAGCCGGATCCAACCGGATTTGATTTCGTTTCTGTGAAAGTGGAACAGGAATCTAATGTCGATCAGGAAGACTTGTTGGAGGCCGGTGAAATTTCTACGTCTGATCCAATCGCTTGCGATTTTGAGTTTGTGAAAGTGGAACAGGATGCTAGCAGTTGTGGAGGGGCCGATTCGAATCTAGACAAATCCAGCGAGGAACTGTTGTGCATTTATATCGACAATAGTGATCATGAAGGCAGTAAATGTAGTGCAACACATGGTACCATAAGTACCAATTCTAAATTAAGTGACCAGATGGTATCGCGTGATGGTGCTAAGCGATTTAAATGCGATATCTGCGataaaaagtttacttttaaaaGCCGATTGGTCAGCCATTTGTATTCGCATACGGATGCGAAGCCATTTAATTGCGATATCTGCCGGAAGGGATTCTGTCGTCGACAGGATATGACTCAGCACCTGTTAATACATAGCGATGATAAGCCATTTAAATGCGATTTGTGTCGGAAAGAATTCCGATTGAAATTCGGTCTCGCCCGACACATGATGTCGCATACGGCTACTAAACCGTTTCATTGCGATTTATGCGATAATAAGTTTACGCAAAAATCGGAATTAACAAGTCACATGTTTTCCCATACCGGTGATAAACCGTTAAAGTGCGATATCTGCGAAAAGGGATTTTCACGCCGAAACGAACTGACCAAGCACTCGTTAATACATACCGGTACGAAACCGTTTAAATGTGAATTTTGTCGGAAAGAATTCCGGTTGAAATTCAGTCTGACCCGGCATATGATGTCGCATTCGACTAATAAACCATTTAAATGCGATTTGTGTGGAAAAGAATTCGGTCAGAAATTTCAGCTGACCGAACATATGGTATCGCATGGTGGCACTAAACCATTCAAATGTGATATCTGTGAAAAAGAATTTCTTTTTCGTAGTCGTCTGGTCAATCATTTATATTCACATACCGATTCGAAACCATTTAACAGCGATATCTGCGAAAAGGAATTTagtcaaaaaaatgaactaactCAGCACCTGTTAATAAATAGTGATACGAAACCGTTTAAATGTTATTTGTGTCGAAATGAATTCGAACAGAAATTTCAGCTGACCAAACACATGGTATCGCATGGTGGATCTAAACCATTTAAGTGCGATATCTgtgaaaaacaatttctttttaaaagtcGTCTGGTGAGTCACCTGTATTCGCATACGGATGCGAAGCCATTTAACTGCGATATCTGCGAAAAGGGATTTAGTCGCAGAAATGAACTGACTCAGCACGTGTTAATACATAGCGGTACAAAACCGTTCAAATGCGATTTGTGTCGAAAAGAATTCCGGTTGAAATTCAGTTTGACTCGGCATATGCTGTCGCATTCGGGTACTAAACCATTCAAATGCGATTTATGTCAAAGCGAGTTTATACAAAAATCGCAACTAAAGAGCCACATGTTATCGCATACCGGTGATAAACCATTTAAATGCGATATCTGTGAAAAACGATTCAATCGTAAAAACGATATGACTCAGCACTCGTTAATACATAGCGGTGCGAAACCGTTTAAATGCGGTTTGTGTGGAAACGAATTCCGACGGAAATTCCAGCTGACCGAGCACATGTCGTCACGTTGCGGTACTACTACGCCATTTAAATGCGGTGTCTGTGAAAAAGAGTTCCGGCTTAAAAGTAGCCTCGCGAGTCACTCGATAACACATAGTGGCGCTAAGCCATTTCCGTGCGATTTGTGTCGAAAGGAATTCAGACGGAAATGCGATCGATCCGCCCACATGTTGTCGCATTCCGGTACTAAACCATTTGAATGTGATATCTGCCAAAAGAGATTTTATCTCAAAAAATATCTGACGAGGCACTTGTCAGTACATACTGATACTAATTAG
- Protein Sequence
- MNVPSTSLSDSTFDDQGVVISPADINRMNKTKRRKTNPAEWKDPKRKRLRDAGKEYISKRGKIVKARIPPPINFDCGCKQLCCKKLSYEKILSNFNQYYKLTYDEQSLFLTKCVNLKEPVRRRKGKTDATSRKLATFKYSIENEEICKKMLLSVFQISSRRIQTLQNNLKDGNFSHKDQRGRHLNRPHAKNSDVKSLVAGHIDSFPRQPSHYSRDKSKNREYLSSDLSLAKMYRLFKQKYPNVEVSKTFYQKVFYEKNYKIGVPRSDTCKHCDLLFSRLSAAENDEERKKIEHESLLHHFKADVAYKSLKEDEATAKTNSNYVVLCVDLQQVLFCPTLSHSSMYYQRQLSSYNFAEIKVEREDDLDTDGISQPDPTGFDFVSVKVEQESNVDQEDLLEAGEISTSDPIACDFEFVKVEQDASSCGGADSNLDKSSEELLCIYIDNSDHEGSKCSATHGTISTNSKLSDQMVSRDGAKRFKCDICDKKFTFKSRLVSHLYSHTDAKPFNCDICRKGFCRRQDMTQHLLIHSDDKPFKCDLCRKEFRLKFGLARHMMSHTATKPFHCDLCDNKFTQKSELTSHMFSHTGDKPLKCDICEKGFSRRNELTKHSLIHTGTKPFKCEFCRKEFRLKFSLTRHMMSHSTNKPFKCDLCGKEFGQKFQLTEHMVSHGGTKPFKCDICEKEFLFRSRLVNHLYSHTDSKPFNSDICEKEFSQKNELTQHLLINSDTKPFKCYLCRNEFEQKFQLTKHMVSHGGSKPFKCDICEKQFLFKSRLVSHLYSHTDAKPFNCDICEKGFSRRNELTQHVLIHSGTKPFKCDLCRKEFRLKFSLTRHMLSHSGTKPFKCDLCQSEFIQKSQLKSHMLSHTGDKPFKCDICEKRFNRKNDMTQHSLIHSGAKPFKCGLCGNEFRRKFQLTEHMSSRCGTTTPFKCGVCEKEFRLKSSLASHSITHSGAKPFPCDLCRKEFRRKCDRSAHMLSHSGTKPFECDICQKRFYLKKYLTRHLSVHTDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -