Ccar054714.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000018.1:2705032-2711490[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0012 0.2 13.9 0.5 2 23 124 146 123 146 0.95 2 15 6.5e-05 0.01 18.0 2.2 1 23 216 238 216 238 0.95 3 15 5.8e-07 9.2e-05 24.4 1.6 1 23 244 266 244 266 0.99 4 15 4.7e-05 0.0074 18.4 3.7 1 23 272 294 272 294 0.94 5 15 9.7e-06 0.0015 20.6 0.4 3 23 302 322 300 322 0.97 6 15 3.4e-07 5.5e-05 25.1 1.1 1 23 328 350 328 350 0.97 7 15 3.8e-09 6.1e-07 31.3 0.4 1 23 356 378 356 378 0.99 8 15 8.2e-07 0.00013 24.0 0.1 1 23 384 406 384 406 0.98 9 15 4.2e-07 6.7e-05 24.9 0.2 1 23 412 434 412 434 0.97 10 15 0.047 7.5 9.0 0.0 1 23 458 480 458 480 0.96 11 15 0.00032 0.051 15.8 0.5 1 23 499 521 499 521 0.97 12 15 1.2e-06 0.00019 23.4 1.4 1 23 527 549 527 549 0.98 13 15 2e-06 0.00032 22.7 3.9 1 23 555 577 555 577 0.97 14 15 2.3e-05 0.0037 19.4 2.4 1 23 583 605 583 605 0.99 15 15 0.0003 0.047 15.9 1.1 2 23 612 633 611 633 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAAATGAAAGACACTGTAAAATCGAAAATGAATCGGAAGAACGCGGGAATGATGTGTCGAAGTCGAATGAAGATACCACAAACGAATACCAACATcggaatGGTGGTGATGAATCCCAGGATTCACAACTTCAGCTGACACAAGATCCAACTCTTCGTGGAGTGACTTTTGAAGCACTTGGTCATATGATGGTGCAACAGGGATGTTCACAGATGGGGATCCCTCCTCCTGGTTATGATATGAGAATACCGACTACTGATAATTATCCGGAGCCTGTTTGTGAGATTGGTGCTTTCACAACTAACGACAAGATGCATCAGAATATAATTGTGTATGAATCGGAGGAGAGTACAAATGAAGTATCGTGCAATATCTGCAGCGTGACATTTTCCAATACGTTTGCTTTACTTAATCATACCAGGTTGACGCATCGAACATTGAGGCCTGATTATCCCGACCGTGATAAACTGAATGCTTGCCGTGAATTTAATGATGCTAAAACAGGTGTTTCACAATGCCCTGATGTAAAAACAGGTCTTCCATTGGTAAACACTCAAAGTACTAATACCGGAATGAATAATAATTATGCTGCGCCTCGAATGATGTGTGACAAAAGTCAAAATACTACAGCCCCTCCACATACTTGCCAAGTTTGTAGTAAATCCTtcaataaactttctgatttaaATCGACACAGCATCATTCACACTGAAGACAGACCTTACAGTTGCAACATATGCAATTCCAGTTTTAGAAATTCTAGTAATTTACGAATGCATCTGATGACACATTCGGATACCAAACCACATCCTTGTACGGTTTGTGAGAAATCATTCCGGCGGTTATCAGATTTAGAACGACATTCTTGTTTGCATACTGGAGCACGTCCTTATGGATGTACTATTTGTGGTATGGCATTCactacaaattataatttaaaaattcattccaTGAAACATAACGGGTCGTTACCATACCCTTGTTCTCAGTGTCATAAATCATTTAGTAAACCGTCAGAATTAAACCGCCATATTGTGATTCATACAGGCGAACGGCCTTATAAATGCCCTCAATGTGGTATGGCTTTTTCAAATTCTAGTAATCTGAGGAATCATATGATCACTCACACTGGTCGTCGTCCTTACCCTTGTTCTATGTGCGATAAGGCATTTACAAGACCATCGGATGTGAAACGCCATGTGTTAATCCACACCGGTGCAAGACCATTCGCTTGCCAGATTTGTGGTCTTGCTTTTGCCGACTCATCAAATTTAAAGAAACATACATTAAcgcatacaaaaaataaaaatttgagcgATATataccaacaaaataaaataacaatagcaGCATCATCGTCGTCTTATCGATGTGATGTTTGTGATCTTGTGTTTTTAGGTTTTCAGGAATTAGAAGCACATCTAGCATCACACGGTAATATTTCAAAGGATGCTTTTATCATGAAACACATTGAAAAGCAAACACAGTATGAATGTGCGATTTGTGGTGTACGATTTGTTCATGCTATTCACTTACAAGAACATTCTTTATCACATGACAGAGAACATTCATTCCAATGTGAAATCTGCGACAAATCATTTGCACACGAATCATTTCTTCAGCAACATGTTTTGACCCATACAGAAGCGCGACCGTTCGAATGTCCGGAgtgttataaatgttttaaaagttcATCGCATCTTAAAAATCATGTTGCAATACATTCTGGTGTTAAACCATATACTTGTGAGACCTGTAATAAATCGTTTTTGAAACAAGCTTCTCTACGTAGACATCAACAGACGCATGAACGAAGTAATCCAATACCGTGTCATATTTGTGGTAAATCTTTTCTTAATATGGAGTACCTTAAAAAACATACCGTTACACATAGTGATGCATGA
- Protein Sequence
- MDENERHCKIENESEERGNDVSKSNEDTTNEYQHRNGGDESQDSQLQLTQDPTLRGVTFEALGHMMVQQGCSQMGIPPPGYDMRIPTTDNYPEPVCEIGAFTTNDKMHQNIIVYESEESTNEVSCNICSVTFSNTFALLNHTRLTHRTLRPDYPDRDKLNACREFNDAKTGVSQCPDVKTGLPLVNTQSTNTGMNNNYAAPRMMCDKSQNTTAPPHTCQVCSKSFNKLSDLNRHSIIHTEDRPYSCNICNSSFRNSSNLRMHLMTHSDTKPHPCTVCEKSFRRLSDLERHSCLHTGARPYGCTICGMAFTTNYNLKIHSMKHNGSLPYPCSQCHKSFSKPSELNRHIVIHTGERPYKCPQCGMAFSNSSNLRNHMITHTGRRPYPCSMCDKAFTRPSDVKRHVLIHTGARPFACQICGLAFADSSNLKKHTLTHTKNKNLSDIYQQNKITIAASSSSYRCDVCDLVFLGFQELEAHLASHGNISKDAFIMKHIEKQTQYECAICGVRFVHAIHLQEHSLSHDREHSFQCEICDKSFAHESFLQQHVLTHTEARPFECPECYKCFKSSSHLKNHVAIHSGVKPYTCETCNKSFLKQASLRRHQQTHERSNPIPCHICGKSFLNMEYLKKHTVTHSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -