Ccar053184.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:12927353-12943955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0049 0.78 12.1 1.6 2 23 79 100 78 100 0.97 2 18 0.0078 1.2 11.4 2.2 1 20 106 125 106 129 0.94 3 18 3.2e-05 0.0051 18.9 3.4 1 23 135 157 135 157 0.98 4 18 0.0013 0.2 13.9 0.8 1 23 163 185 163 185 0.97 5 18 4e-05 0.0064 18.6 0.4 1 23 191 213 191 213 0.99 6 18 1.4e-05 0.0023 20.0 0.5 1 23 219 241 219 241 0.98 7 18 2.2e-06 0.00035 22.6 0.8 1 23 247 269 247 269 0.98 8 18 3.8e-05 0.006 18.7 0.7 1 23 275 297 275 297 0.98 9 18 2.2e-06 0.00035 22.6 0.8 1 23 303 325 303 325 0.98 10 18 2.2e-06 0.00035 22.6 0.8 1 23 331 353 331 353 0.98 11 18 3.8e-05 0.006 18.7 0.7 1 23 359 381 359 381 0.98 12 18 2.2e-06 0.00035 22.6 0.8 1 23 387 409 387 409 0.98 13 18 3.8e-05 0.006 18.7 0.7 1 23 415 437 415 437 0.98 14 18 2.2e-06 0.00035 22.6 0.8 1 23 443 465 443 465 0.98 15 18 2.2e-06 0.00035 22.6 0.8 1 23 471 493 471 493 0.98 16 18 1.6e-06 0.00026 23.0 1.0 1 23 499 521 499 521 0.98 17 18 1.3e-05 0.002 20.2 2.5 1 20 526 545 526 547 0.95 18 18 0.026 4.2 9.8 5.8 1 23 557 579 557 579 0.98
Sequence Information
- Coding Sequence
- atgttcgtgtcgggtccggtagtgGAGGTTAAAGTTGAACGTGAAGACTCGTACGCTGGTGAAATTGCTGAGTCTGAATCAAATTCTTTTGTGCTTGTGAAAGAGGAACAGTATTCAGGCAGTTCTGAAGAGGACGATGCTAACTCGGAGAAATCTAGTGAAGAAGTGTTGCGTACCACCAATGCAGAGTATGGTGAATGTGAAACGAACGATATTATCTTAAGTACGCTGATCAAGTGTGATGTATGCGAAAAGGAGTTTAGTTGCCGAAAATATCTGGGCAGACACATGTTAATACACAGCAATATTAAACCGTTTAAGTGCGATGTATGTCCGAAGGAGTTCAATTGTAAACATGCTTTGACTAGTCACATGCCAGTATTACATACTGGCAATAAACCATTCAAGTGCGATTTTTGTCAAAACGAATTCAAACAAAAATCATACTTAAGGAAACATATGTTGTTACATAATGATATTAAACGATTTTATTGCGATGTTTGTCGAAAAGGTTTCAGATGGAAATATGCTCTAAATAAACACTTGTTATTGCATTGTGGTATGAACTCATATAAGTGCGAACTGTGTGAAAAGGGATACAAATCTAAACTTTCACTAATTAGTCACATGTTAATACATGACGGTGTTAAGGCATTTAAGTGTGAATTGTGTCCGAGGGCATTTAAACAGAAATCGAAAATAATTGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACAGAAATCGGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGTTCGTTTAAACAGAAATCGGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCATTTAAACAGAAATCAGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACAGAAATCGGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGTTCGTTTAAACAGAAATCAGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACAGAAATCAGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGTTCGTTTAAACAGAAATCAGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACAGAAATCGGAAATAACCGAACACATGTTATCACATGAAAATGTTGAGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACAGAAATCGGAAATAACCGAACACATGTTATCACATGAAAATGTTTTGGCATTTAAGTGTGAATTGTGTCCGAGGTCGTTTAAACGGAAATCGGAAATAACCGAACACATGTTATCACatggtgctaagccattcaagtgcAACGTGTGTCAAAAAGAATTCAAACGGAAATCATACTTAAGACAACACACGTTGTTtttaagtagtagtagtagtggtaAAATGTTTAAGTGCCATTTTTGCGAAAAGGAATTCAATTGGAGATGTTCTCTAAACAGTCATATGATATCACATACTGTTGCTAAGTCTTTGAAGCCGACTCACACCTTAAGGCGACATTTCGACATTGTTCGCAGGGCCAACTGA
- Protein Sequence
- MFVSGPVVEVKVEREDSYAGEIAESESNSFVLVKEEQYSGSSEEDDANSEKSSEEVLRTTNAEYGECETNDIILSTLIKCDVCEKEFSCRKYLGRHMLIHSNIKPFKCDVCPKEFNCKHALTSHMPVLHTGNKPFKCDFCQNEFKQKSYLRKHMLLHNDIKRFYCDVCRKGFRWKYALNKHLLLHCGMNSYKCELCEKGYKSKLSLISHMLIHDGVKAFKCELCPRAFKQKSKIIEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVEAFKCELCPSSFKQKSEITEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVEAFKCELCPSSFKQKSEITEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVEAFKCELCPSSFKQKSEITEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVEAFKCELCPRSFKQKSEITEHMLSHENVLAFKCELCPRSFKRKSEITEHMLSHGAKPFKCNVCQKEFKRKSYLRQHTLFLSSSSSGKMFKCHFCEKEFNWRCSLNSHMISHTVAKSLKPTHTLRRHFDIVRRAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -