Ccar058491.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
-
Assembly
GCA_035578175.1
Location
JAQMRL010000042.1:478267-522755[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.044 6.9 9.1 1.1 1 23 175 197 175 197 0.95
2 22 2.3e-05 0.0037 19.4 1.0 1 23 203 225 203 225 0.98
3 22 2.1e-06 0.00034 22.7 1.9 2 23 232 253 231 253 0.97
4 22 3.3e-07 5.2e-05 25.2 0.9 1 23 259 281 259 281 0.97
5 22 1.6e-05 0.0025 19.9 0.7 1 23 287 309 287 309 0.98
6 22 0.00081 0.13 14.5 2.7 1 23 315 337 315 337 0.96
7 22 5e-06 0.00079 21.5 3.6 1 23 343 365 343 365 0.98
8 22 3.3e-05 0.0052 18.9 1.0 1 23 371 393 371 393 0.97
9 22 2.6e-05 0.0041 19.2 0.5 1 23 399 421 399 421 0.98
10 22 9.6e-05 0.015 17.4 3.5 1 23 427 449 427 449 0.95
11 22 0.65 1e+02 5.4 3.6 1 14 455 468 455 469 0.91
12 22 3e-05 0.0048 19.0 1.3 1 23 593 615 593 615 0.99
13 22 4.7e-06 0.00074 21.6 1.4 1 23 621 643 621 643 0.98
14 22 3.3e-05 0.0053 18.9 2.7 1 23 649 671 649 671 0.98
15 22 3e-06 0.00047 22.2 2.5 1 23 677 699 677 699 0.98
16 22 0.00011 0.017 17.3 2.0 1 23 705 727 705 727 0.98
17 22 1.1e-07 1.7e-05 26.7 2.0 1 23 733 755 733 755 0.98
18 22 6.7e-07 0.00011 24.2 1.3 1 23 761 783 761 783 0.98
19 22 0.00035 0.056 15.7 2.4 1 23 789 811 789 811 0.98
20 22 1.3e-05 0.0021 20.1 3.8 1 23 817 839 817 839 0.98
21 22 8.5e-05 0.014 17.6 0.9 1 23 845 867 845 867 0.98
22 22 0.00033 0.052 15.8 4.0 1 23 873 895 873 895 0.99

Sequence Information

Coding Sequence
ATGGAAGTTGGACAGTTTGAGTCAAAGATAAAAACTGAAGAGGTGCACACAGAAATTGAATTGAAAGCTGAGTATGAAGACTTGGACACCGGTGAAATTTCTGAAACGGAACCAATTGCAGATGATTTTGAGTTTGTGAAAGTGGAACAGGAATTGAAAGCTGAGCATGCAGACTTGGAGACTGGTGAAATTTCTCGGTCAGATCCAAATACATTTGATTTTGAGTTTGTTAAAGTGAAACAGgaAATTGAACAGGAGGATGATTTGAGGGCAGGTGAAGACAACAACAGCTGGTCGTCTGATCCTCTGGAAAATAACTCCGTTAAAGTAGAAAAGGATTCAGGGGATTGTGAAGAGGTGGATTTTAATGTGGAAAAATCGAATGGGCAACTGTTGTATACGAATAGAGATAATAGTGATCATGAAGGCAGTGAATGTAGTGCAACACATGGTACCATAAGTAGCGATTCTAAATTAACCAGCCAGACGACGCAGATTGCATCGTGTGTtggtgctaagccatttaaaTGTGATATCTGCCAGAAGGGATTCGCTTGTAGAGATATTCTGACAAAGCACTTGATAATACATAATGATGCTAAGCCATTTAAATGTGATATCTGCCAAAAGGAATTCAAACGCAAAGATTATCTGCCACGGCACTTGTTAATCCATAGTGATGTTAAACTATTGAAATGTGATATCTGCCAAAAAGAATTTTCACAGAGAAGTCACCTACAATCTCATTTGTTAATACATAGTAATGCTAAGCCATTTAACTGTGATATCTGCCAAAAAGTATTCAAACGCAAATCTGAACTGACTCAGCACTTGTTAATTCATACtggtgctaagccatttaagtgtgatATCTGCCAGAAGCGATTCGCTCGTAAAGATATTCTGACTCAGCACATGTTAATACATAGTGATGCTAAGCCATTTAATTGTGATATCTGCCAAAAAGTGTTCAAACGCAAATGTGAAGTGACTCAGCACTCGTTAATACATAGCAATGCTAAGCCATTTAAATGTGATATCTGTGAAAAAGAATTTTCGCACAAAAATCACCTGAAAGATCATATTTTAGTACATTCTGATGCTAAGCCATTTAGCTGTGATGTCTGCCGAAAAGGATTCAAACGCAAATTTGAACTGACTCAGCACGTGTTAATACATAACGATGCTAAGCCATTTAAATGCGATATCTGTGAAAAAGAATTTTCACTCAGAAGTTACCTAAAAGATCACGTTTTAGTACATTCTGATGCTAAGCCATTCAGCTGTGATATCTGCCAAAAACGATTCAAACGCAAATACGAACTGACTCTGCACTCGTTTAAACATAGCGATTCTAACCCGTTTAAATGCGATTTgtgtcaaaaagaatttaaaCGGCGATGTAACGAATTGAAAGCTGAGCTTGAAGACTTGGAGACTGGTGAAATTTCGCAGTCAGATCCAAATACATTTGATTTTGAGTTTGTGAAAGTGAAACAGGAAACTGAATGGGAAGATGATTTCAGGCCGATTGAAGACAATAGCTTGTCATCTGAAATTCTAGAAAATAACTCCATTAAAACAGAAAAGGATTCGAGCGATTGTGAAGAGGTAGATTTTAATGTGGAAAAATCAAATGGGCAACTGTTGTATACGAATAGAGACTATAGAGATCATGAAGGCAGTGAATATAGTGCAACACGTGTTACCATAAGTAGCGATTGTAAATTAAGCAGCCAGACGACGCAGATGGCATCACGTGATTGTGCTAAGCCATTTAAATGTGATATCTGTGAAAAAGAATTTCGTTTTAAAAGCCGTCTGGTCGGTCACTTACGAACACATACTGGCGCCAAACCATTTACGTGTGATTTGTGTCGGAAAGAATTTTCACAGAGAAGTACTTTAAAAGTTCACATGTTATTACATTCGGACGGTAAACCGTTTAAGTGCGATTTGTGTCGAAATGAATTTACACAAAGAAGTCACCTGAAAGTTCACATGTTAGTACATTCTGACGCTAAGCCATTTAAATGTAACGTCTGTAGAAAAGGATTTAATCGCAGGTCCAGTCTGAATAAACACGTGTCAACACATAGCGGTATAAAACCATTCAAATGCGATTTgtgtcaaaatgaattttcacAGCGAGCTCACCTTAAAGATCACATGTTATTACATAGTGACGATAAGCCGTTTAAATGTGATATCTGTGATAAAGAATTCAAACGGAATTCGGATTTAAAAATGCACATGTTTACACATAGTGACGATAAGCGATTTAAATGCGGTTTGTGTCAAAAAGAATTCAAACGTAATTCTGATCTTAAAATacacatgttatcacatagtggcgTGAAACCATTCAAGTGTGGTTTGTGTCAAAACGAATTTACTTTGAGAAGTCATCTAAAATCTCACATGTTAATACATTCTGACGCTAAGCCATTTTCGTGTAATGTCTGCCAAAAAGGATTCAAACATAAATATTATCTGAATAAACATTTGTTAATACATATCGGTATAAAACCATTTCAGTGTGATTTGTGTCGGAAAGAATTTAAATGGAAATCTAATTTAACCGTTCACATGTTATTGCATGGTAGTGCGAAACCATTCAAGTGCGATTTCTGTTCGAATGAATATACACAAAAACATGCTCTAACCAAACACATGTTGACACATAGTCAAGTTAAACCTCCTGGTGCGGCGTGTTTCTAG
Protein Sequence
MEVGQFESKIKTEEVHTEIELKAEYEDLDTGEISETEPIADDFEFVKVEQELKAEHADLETGEISRSDPNTFDFEFVKVKQEIEQEDDLRAGEDNNSWSSDPLENNSVKVEKDSGDCEEVDFNVEKSNGQLLYTNRDNSDHEGSECSATHGTISSDSKLTSQTTQIASCVGAKPFKCDICQKGFACRDILTKHLIIHNDAKPFKCDICQKEFKRKDYLPRHLLIHSDVKLLKCDICQKEFSQRSHLQSHLLIHSNAKPFNCDICQKVFKRKSELTQHLLIHTGAKPFKCDICQKRFARKDILTQHMLIHSDAKPFNCDICQKVFKRKCEVTQHSLIHSNAKPFKCDICEKEFSHKNHLKDHILVHSDAKPFSCDVCRKGFKRKFELTQHVLIHNDAKPFKCDICEKEFSLRSYLKDHVLVHSDAKPFSCDICQKRFKRKYELTLHSFKHSDSNPFKCDLCQKEFKRRCNELKAELEDLETGEISQSDPNTFDFEFVKVKQETEWEDDFRPIEDNSLSSEILENNSIKTEKDSSDCEEVDFNVEKSNGQLLYTNRDYRDHEGSEYSATRVTISSDCKLSSQTTQMASRDCAKPFKCDICEKEFRFKSRLVGHLRTHTGAKPFTCDLCRKEFSQRSTLKVHMLLHSDGKPFKCDLCRNEFTQRSHLKVHMLVHSDAKPFKCNVCRKGFNRRSSLNKHVSTHSGIKPFKCDLCQNEFSQRAHLKDHMLLHSDDKPFKCDICDKEFKRNSDLKMHMFTHSDDKRFKCGLCQKEFKRNSDLKIHMLSHSGVKPFKCGLCQNEFTLRSHLKSHMLIHSDAKPFSCNVCQKGFKHKYYLNKHLLIHIGIKPFQCDLCRKEFKWKSNLTVHMLLHGSAKPFKCDFCSNEYTQKHALTKHMLTHSQVKPPGAACF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-