Ccar053224.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
-
Assembly
GCA_035578175.1
Location
JAQMRL010000015.1:13418413-13494460[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0052 0.83 12.0 0.2 1 23 317 339 317 339 0.98
2 25 7.7e-05 0.012 17.7 2.5 1 23 345 368 345 368 0.98
3 25 0.009 1.4 11.2 0.3 1 23 374 397 374 397 0.95
4 25 0.00035 0.055 15.7 3.7 1 23 403 425 403 425 0.99
5 25 0.0056 0.9 11.9 0.8 1 23 431 454 431 454 0.94
6 25 7.4e-07 0.00012 24.1 0.7 1 23 459 481 459 481 0.99
7 25 0.0081 1.3 11.4 3.2 1 23 487 509 487 509 0.98
8 25 1.1e-05 0.0017 20.5 1.1 1 23 515 537 515 537 0.98
9 25 0.0018 0.29 13.4 1.2 1 23 542 565 542 565 0.97
10 25 0.00026 0.041 16.1 2.3 1 23 571 593 571 593 0.99
11 25 1.3e-06 0.00021 23.3 2.1 1 23 859 881 859 881 0.98
12 25 0.00023 0.036 16.3 1.8 1 23 888 910 888 910 0.98
13 25 0.00027 0.043 16.0 0.6 1 23 917 939 917 939 0.98
14 25 4.3e-05 0.0068 18.5 0.1 1 23 945 967 945 967 0.99
15 25 0.052 8.2 8.9 6.9 1 23 973 995 973 995 0.98
16 25 9.6e-05 0.015 17.4 0.9 1 23 1001 1023 1001 1023 0.98
17 25 0.00012 0.019 17.1 0.8 1 23 1029 1051 1029 1051 0.99
18 25 1.7e-05 0.0027 19.8 0.7 1 23 1057 1079 1057 1079 0.98
19 25 4.6e-05 0.0073 18.4 1.0 1 23 1085 1107 1085 1107 0.98
20 25 6.8e-07 0.00011 24.2 0.8 1 23 1113 1135 1113 1135 0.96
21 25 1.9e-06 0.0003 22.8 0.9 1 23 1141 1163 1141 1163 0.98
22 25 0.00016 0.026 16.7 0.6 1 23 1169 1191 1169 1191 0.98
23 25 4e-05 0.0063 18.6 3.0 1 23 1197 1219 1197 1219 0.98
24 25 0.00018 0.029 16.6 0.3 1 23 1225 1247 1225 1247 0.96
25 25 0.00028 0.045 16.0 0.4 1 23 1252 1274 1252 1274 0.99

Sequence Information

Coding Sequence
ATGCTGGATGCTGGAACTGATATCACATTGGCGGAGTGTGCAGTAGTTGATTTTGTTGTTAATGCAGATGTGGCTGTGTTTCAGGAAACAACACGCGAAGATAAAATAAACCCGATTGAAGACAAGAGATGGTCATCTGATCCACTGGCTAATAACTGCATTAATAAAGATAAGTGGCGCAACATTCATCGTGAATATGTTCCTGCCAAGCAGACAGTACCTGGACAGTTGAATGGACGCGTCCTGGAATGGCGGAGAGCACGCATTCTACATGTGCTGCATGAACTCACTGAGAATGGCTGGATATTGTGCGACGACAAAGTGGCGGCCCATTCGTTGCGAAAAAAAGACATTCTAACGTGTCTGCACTTGCTCATTAGCCGTGATATTGCCCCTTGCGAATTATTTTTAGGCCCCGTGATGAAGCCGtacctcaagggaactcatcatggcAGCGGACCGGTGGTCTTGGAAGCTGTAACCACTGTGCTGAATGGGCTATTTTTGGAGGATTACCAAAGGGTGCTTCCAATCTTGGAATCCATAGGAAGAGATCTGAAAGTGGAGCATCTAGCCTTGGACTCTGGTGACATTTCTCAGACTGATCCAAATGCACAGAATTTTGAGTTTGTCAACATGAAACAGGAAACAACACGCGAAGATAAAATAAACCAGATTGAAGACAAGAGCTTGTCATCTGATCCACTGGCTAATAACTGCATTAAAAATGATAAGGATGCACGTGTTTCTGAAGAAGAAGTAGATTTTAATCCAGACAAATCTAGCGGAGAACTTTCGTGCATTGATAGAGACGGCAGTAGTTATTCCAGTGGTGATATAATAATAGACAGTGGATGTGGTGCAACATTTAGTACCGGAAATGATAGCGGTTCTAATATTAGTACCGGTACCAGTCACGTGGTACCACCGCGTAGTGGTAGAAAGCGTTTTAAATGTGATTTGTGTCAAATTGAATTCGATGCTAAAAGTCGTCTAACGGAGCACATATTAATACATTTTCGTGGTAAAACGTATAAATGTGATTTTTGCGAATCCATATTTAGACGAAAATACAGTCTAAATACGCATATGTTAACGACACATAGTGACATTAAGCCATTTAAGTGTGAAATCTGCGAGAAGGAATTTAGAAAGAAGCCCATTCTGTACGGACACATGGCAACGATGCATGCTGAAATTAAGCCGTTTAAATGTAACGTGTGTCGCGAGGAGTTCGTATATAAATATCGTCTGAATCACCACATGTTGACGCATTTTACTGAAACGCCGTTTATATGTACGGTATGTCGATTTGGATTTCGAAAAGAATACGAACTTAATAAACACGTCTTGTTAACGCATAACATTAAGCCGTATAAGTGTGACGTGTGTCAAAAACGATTTAAACGAAGAATAGATTTAAACGCGCACATGTTAGTACATAGTGGCGTTAAGCCGTTTAAATGTGACGTGTGCCAATCGGAATTTAGAATAAAATGTCAATTAAAAACACACATGTCGGTACATAGCGGCATTAAACCGTATAATTGTAACATCTGCGATAAAGGATTCGGAAGAAGCTATCGTCTGACTAAACACTTGTTAACACATAACGTTAAGCCATTTAAGTGTAACATGTGTGAATATGAATGCGTAAAAAAATCTCTTCTAAATGAGCACTTGTTAATCGTACATGGTGAGGTTAAACCGTATAAGTGTGACAAGTGTCAAAACGAATATGCAAAAGAATCTCATCTAAAAATTCACATGTTAACACACGCTGAAAATAAGCAGGACCTGAAAGTGGAGCATCTAGACTTGGACACTGGTGACATTTCTCAGACTGATCCAAATGCACAGAATTTTGAGTTTGTCAAAGTGAAACAGgaAATGGGAGAGGAAGATGAAATTAGCCCAATTGAGGATAAGAGCTGGTCATCTGATCCCCTGGCAAATAACTGCATCAAAACAGAAAAGGATGCAGGCGGTTCCGAAGAAGTCGATTTTAATCTAGATAAATCTAGCGGAGAACTTTTGTGCGTTGATAGAGAACGTAGTTATTCTAGCGGTGATATAGACAGTGGATGTGGTACAACACATAGTACCGGAAATAGTAATTTTGATATAAGTAGCACTACTAATCACGTGGTATCACATAGTGGCGCTAAGACATTTAATTGTAACGAGCTGAAAGTTGAGCGTGAAGACTTGGACGCTAATGGAATTCACAAGTCTGATCCAAATGCATGTGATTTTGAGTTTGTGCGAGcagaacagGACCTGAAAGTGGAGCATCTAGATCTGGACACTGGTGACATTTCTCAGACTGATCCAAATGTACAGAATTTTGAGTTTGTCAGCGTGAAACAGGATTCAGGTGGCTGTGCGGATGTTGATTCTAATGTGGACGAATCTAGAGGGCAACTGTTGTGCAATAATAGAAGAGAGTATAGTTACGTTAGTGATCGTGAAGGCAGTGAATGTGGTGCAACGGAAAATATTACCATAAGTAGCGATTTTAATTCCAGTAGACAGACCAGTCACATTGTATCGCGTAGTGGTGCTCCTGAGCAATTCAAGTGCGATGTCTGTGGAAAAGAGTTTACTAATAAACGTAGTCTGAGCCGTCACAAGTTAACGCATAGTCGTCGCGATAAAccatttaagtgtgatttgtgtcaaaAAGAACTTCGCAACAAAACGACACTACGCACGCACATGTTGTTGCATAGTGACGACGCTAAGCCATTTAAATGCGGTTTGTGTCAAAGTGGATATACACAGAAAGCGGCGTTGAAGAAACACATGTTGTCGCATACCGGCACTAAACCATATAAATGCGATTTGTGTCCAAGGGAATTTATCGAGAAAGCTGCGTTGACGACACACATGTTGTCACATAGCGACGTTAGACCACATAAATGCGATTTGTGTCTAAGCGAATACAAACGGAAACATCATCTAGCTAAACACATGTTATCGCATGATGTCGCACAAATGTTTAAATGTAACTTGTGTGAAAATGAATACGTAGACAAAGATACGTTAAAGAGACACATGTTGTCACATAGTGGCGATAAGCCATTTAAATGCGATTTGTGTGAAAACGAATTCGCGCATAAAGCTGCCTTAAACAGTCACATGTTGACACACAGTGGCGTTAAGCAATTCAAATGTGATATATGCGGAAATGAATTCAGACTTAGATCGACACTAAAAACACACATGTTAGTACATAGCGGTGTTAAGCCATTTAAATGTGACGTATGCCGGAATGAATTTAGCCGTAGATCCGCGCTAAAATCACACATGTTACTACACAGCGGTACTAAGCCATTTAATTGTGATATATGCGGAAAGGCGTTTCGACAGAAACGTAATTTAGTCAATCACATGTTGTTCCATAGTGGTATTAAACCATTTAAATGCGGTTTATGTCAAAAGGGATTCAGACGGAAAGCGCAGCTTACGGTACACATGTTGTCACACAGCGGTGTTAAGCCATTTAAATGCGATTTGTGTGAAAATGAATTCGCGCAGAAAGCTACCTTAACGAGTCACATGTTGAAACATAGTAGCGTTAAGCAATTTAAATGTGACGTATGTCGGAAAGAATTTAGACATAGAGCGACGCTGAGATCACACATGTTACTACATAGCGGTGCTAAGCCATTTAAATGTGATATATGCGGAAACGCGTTTCGACAGATATCTCATCTAGTCGGTCACATGGTGTTGCATGGTAGTAAGCCGTATAAATGCGGTTTGTGTCAAAATGAATTCGGACGGAAAGCACAGCTTACCGAACACATGTTATCACATAACGGTACTCAGCCGTTGAGAAGAGAAGGAGTCGTAACTTCCTAA
Protein Sequence
MLDAGTDITLAECAVVDFVVNADVAVFQETTREDKINPIEDKRWSSDPLANNCINKDKWRNIHREYVPAKQTVPGQLNGRVLEWRRARILHVLHELTENGWILCDDKVAAHSLRKKDILTCLHLLISRDIAPCELFLGPVMKPYLKGTHHGSGPVVLEAVTTVLNGLFLEDYQRVLPILESIGRDLKVEHLALDSGDISQTDPNAQNFEFVNMKQETTREDKINQIEDKSLSSDPLANNCIKNDKDARVSEEEVDFNPDKSSGELSCIDRDGSSYSSGDIIIDSGCGATFSTGNDSGSNISTGTSHVVPPRSGRKRFKCDLCQIEFDAKSRLTEHILIHFRGKTYKCDFCESIFRRKYSLNTHMLTTHSDIKPFKCEICEKEFRKKPILYGHMATMHAEIKPFKCNVCREEFVYKYRLNHHMLTHFTETPFICTVCRFGFRKEYELNKHVLLTHNIKPYKCDVCQKRFKRRIDLNAHMLVHSGVKPFKCDVCQSEFRIKCQLKTHMSVHSGIKPYNCNICDKGFGRSYRLTKHLLTHNVKPFKCNMCEYECVKKSLLNEHLLIVHGEVKPYKCDKCQNEYAKESHLKIHMLTHAENKQDLKVEHLDLDTGDISQTDPNAQNFEFVKVKQEMGEEDEISPIEDKSWSSDPLANNCIKTEKDAGGSEEVDFNLDKSSGELLCVDRERSYSSGDIDSGCGTTHSTGNSNFDISSTTNHVVSHSGAKTFNCNELKVEREDLDANGIHKSDPNACDFEFVRAEQDLKVEHLDLDTGDISQTDPNVQNFEFVSVKQDSGGCADVDSNVDESRGQLLCNNRREYSYVSDREGSECGATENITISSDFNSSRQTSHIVSRSGAPEQFKCDVCGKEFTNKRSLSRHKLTHSRRDKPFKCDLCQKELRNKTTLRTHMLLHSDDAKPFKCGLCQSGYTQKAALKKHMLSHTGTKPYKCDLCPREFIEKAALTTHMLSHSDVRPHKCDLCLSEYKRKHHLAKHMLSHDVAQMFKCNLCENEYVDKDTLKRHMLSHSGDKPFKCDLCENEFAHKAALNSHMLTHSGVKQFKCDICGNEFRLRSTLKTHMLVHSGVKPFKCDVCRNEFSRRSALKSHMLLHSGTKPFNCDICGKAFRQKRNLVNHMLFHSGIKPFKCGLCQKGFRRKAQLTVHMLSHSGVKPFKCDLCENEFAQKATLTSHMLKHSSVKQFKCDVCRKEFRHRATLRSHMLLHSGAKPFKCDICGNAFRQISHLVGHMVLHGSKPYKCGLCQNEFGRKAQLTEHMLSHNGTQPLRREGVVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-