Ccar029867.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
Prdm9
Assembly
GCA_035578175.1
Location
JAQMRL010000003.1:111401841-111436755[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 5.1e-06 0.00081 21.5 3.2 1 23 8 30 8 30 0.99
2 22 4.7e-06 0.00074 21.6 0.6 1 23 36 58 36 58 0.99
3 22 3.8e-06 0.0006 21.9 0.7 1 23 64 86 64 86 0.99
4 22 0.00032 0.051 15.8 1.9 1 23 92 114 92 114 0.99
5 22 0.39 63 6.1 2.8 1 23 650 673 650 673 0.89
6 22 6.4e-06 0.001 21.2 2.4 1 23 719 741 719 741 0.98
7 22 6.1e-06 0.00096 21.2 1.0 1 23 747 769 747 769 0.99
8 22 1.3e-06 0.0002 23.3 1.4 1 23 775 797 775 797 0.99
9 22 1.7e-05 0.0027 19.8 2.8 1 23 803 825 803 825 0.99
10 22 4.1e-06 0.00065 21.7 3.5 1 23 831 853 831 853 0.99
11 22 6.1e-06 0.00096 21.2 1.0 1 23 859 881 859 881 0.99
12 22 1.3e-06 0.0002 23.3 1.4 1 23 887 909 887 909 0.99
13 22 6.1e-06 0.00096 21.2 1.0 1 23 915 937 915 937 0.99
14 22 1.3e-06 0.0002 23.3 1.4 1 23 943 965 943 965 0.99
15 22 1.7e-06 0.00026 23.0 1.1 1 23 971 993 971 993 0.99
16 22 1.3e-06 0.0002 23.3 1.4 1 23 999 1021 999 1021 0.99
17 22 6.1e-06 0.00096 21.2 1.0 1 23 1027 1049 1027 1049 0.99
18 22 1.3e-06 0.0002 23.3 1.4 1 23 1055 1077 1055 1077 0.99
19 22 1.7e-05 0.0027 19.8 2.8 1 23 1083 1105 1083 1105 0.99
20 22 4.1e-06 0.00065 21.7 3.5 1 23 1111 1133 1111 1133 0.99
21 22 5.1e-06 0.00081 21.5 3.2 1 23 1139 1161 1139 1161 0.99
22 22 4.7e-06 0.00074 21.6 0.6 1 23 1167 1189 1167 1189 0.99

Sequence Information

Coding Sequence
ATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTCAGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAACAATAGTGATTTATCATCCCATATGAGAATCCATACAGGTGAAAAACCGTATAAATGTAATTTGTGTGATTATGCTAGTACTAACAAAGGTAATTTATCAACCCATATGAGAATCCATACAGGTGAAAAACCGTTTAAATGTAATCTGTGTGATTATGCTAGTACTCGTAGGAATAGTTTATCATCCCATACGAGAATGCATACAgGCCTCAACCCAGATAAACCAGATTTCGTTAAACGATTTGAGGTGAGAAAAGAGAGTGAGAAGAAACGCAACGCCAAACAGATAAAAGCTTTAAAACGCCACAACTTATTTCTTCCACCTTTTAGTAgtactaaacaaaaacaacaatccCAAAAGAAAGAGCAAAGAGAAAATAAGACATCTGAAGCAGGGAGAGGTAGACAAATTAAGAAAGTGACAAACAATGACAGTCGAACTGCAAGTGCGATTGATAGCTGTGCAGAACCTAAACTGCCTAAACGGAAGGGAAGACAAAAGCAGACCCAAGTTAAAAAGAAAGAACCAAAGGATGAGAATAGAAATGTGGAAAGTGATGAGAAATGTGGTAAAGTTGAAGAAGGTACGAAAGATGGAACTGGTGTGGTAATAGATGCCAGTAACAATGGAAACGGTGTGCAAGAGGAAAACACCAAACTGGGTTATTCTGTGAAACGAGTAAATGCCATTGAAGAGTTTCTACTTGCTTCTTCTACTTGTTCTACTTTTCCTACTGTCGAATCTGAATTGATCTGTCGGTTGGATTCCCTTTCAATTGCAAATTGGGATGATGCAAGTAATGAGAGTGACTGCAGTACCAGTACTGGCTGTGAAAAAGCAACCGAAGGTGATCATTTGCAATTTAGTGATGACACCATCAAAGAtGCCGTCTCACTGTACATGATAATGGATGGGTTGTGTGATGCGATTGAGGAAGGTGGAGGAAAAGAGAAGAAAAAAGACAAAGAGAAAGAGGAAGAAAGGATGATGGGTCCTTGTGAAGTACAGCCAGAAGAGGTTGAAAAGAGAAGAGAAGTGGATTGTAGCTCATCATCTGCACTAGACCAACAAACAGGCAATGACGATCACCAAGAAGAAGCAGGGCACgtggaagagaaggaggaggagaaggagaaagaggaagAGAAGAGTGGTGATGTTTCAGTGAGAGTGGCAAGGGGGAGGTACCCTAAGAGGAAGAGCATTCCAGTGGTAGATTATAGAGAGCCAGATGATTTGAATGCAGACCACTTTATTTATTGTGATGACTGTGAGAGAGAGTGGATCAGCCACTGCGATGTCCATGGACCTCTCAACAACATTGAAGACTCTCAGgTTCCAATAGGACCGTTAGAGGACAACATGGAACGGGCAATTGAGACACTACCAGATGCGCTGAAAGTAGCCCAGAGTAAAATACCACATGCATCTTACGGAGTGTGGACCACAAAGGTTATACCGAAGAGGATAAGATTCGGTCCGTATGAAGGGAAAATAGTCTTCACTGAACCAAGGGACACCAGATATTGTTGGCAGATAGCGAAAGAAGGCAAATGTGGTCACCTGGTGGATGGAAACGATAAGAACACGAGCAACTGGATGAGATATGTGAACTGCGCACGTTTCAAAGAAGAACTCAATCTGTTTGCGTACCAGTACCACggtaaaatttattacagaactTTCAAGGACATCGCACCGCATCAAGAACTGCTTGTGTGGTATGGCAAAGAATACGCACAGAAACTGGGCATCACTGCCAAACTCTTCAATAATCCTGATATGAGCATTATTCAGAATGTTGCGTTTTATTGTGTAAAGTGCAACAGAGTGTTTACATCTCCAATATATCGTGACGAACATTATGAGAGGTGTCATCTAAATTCTTGTAAAAGAGTGTACAGCATTACTGAATCAACTGAGAATGGTAACTGTAACAACAACAATAAGTACAGTGATACTCTGAAGAGGAGGGGTAATGGGGAGGATAAGGTGAAGTGTAATATCAAGTTACACAAATGTAATCTGTGTGATTATGCTAGTACTAACAAAGGTAATTTATCAAGACATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAATAATAGTGATTTATCAAAACATTTGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCGGAGCAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTACCAATGGTTATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTCGGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAATAATAGTGATTTATCAAAACATTTGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCGGAGCAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAATAATAGTGATTTATCAAAACATTTGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCGGAGCAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAATAATAGTGATTTATCAAAACATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCGGAGCAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAATAATAGTGATTTATCAAAACATTTGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCGGAGCAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTACCAATGGTTATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTCGGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTCAGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTAACAATAGTGATTTATCATCCCATATGAGAATCCATACAGGTGAAAAACCGTATAAATGTAATTTGTGTGTTTATGCTAGTACTAACTAA
Protein Sequence
MHTGEKPYKCNLCDYACTQSSSLSTHMRMHTGEKPYKCNLCDYASTNNSDLSSHMRIHTGEKPYKCNLCDYASTNKGNLSTHMRIHTGEKPFKCNLCDYASTRRNSLSSHTRMHTGLNPDKPDFVKRFEVRKESEKKRNAKQIKALKRHNLFLPPFSSTKQKQQSQKKEQRENKTSEAGRGRQIKKVTNNDSRTASAIDSCAEPKLPKRKGRQKQTQVKKKEPKDENRNVESDEKCGKVEEGTKDGTGVVIDASNNGNGVQEENTKLGYSVKRVNAIEEFLLASSTCSTFPTVESELICRLDSLSIANWDDASNESDCSTSTGCEKATEGDHLQFSDDTIKDAVSLYMIMDGLCDAIEEGGGKEKKKDKEKEEERMMGPCEVQPEEVEKRREVDCSSSSALDQQTGNDDHQEEAGHVEEKEEEKEKEEEKSGDVSVRVARGRYPKRKSIPVVDYREPDDLNADHFIYCDDCEREWISHCDVHGPLNNIEDSQVPIGPLEDNMERAIETLPDALKVAQSKIPHASYGVWTTKVIPKRIRFGPYEGKIVFTEPRDTRYCWQIAKEGKCGHLVDGNDKNTSNWMRYVNCARFKEELNLFAYQYHGKIYYRTFKDIAPHQELLVWYGKEYAQKLGITAKLFNNPDMSIIQNVAFYCVKCNRVFTSPIYRDEHYERCHLNSCKRVYSITESTENGNCNNNNKYSDTLKRRGNGEDKVKCNIKLHKCNLCDYASTNKGNLSRHMRMHTGEKPYKCNLCDYASTNNSDLSKHLRMHTGEKPYKCNLCDYASTRSSNLSTHMRMHTGEKPYKCNLCDYACTTNGYLSTHMRMHTGEKPYKCNLCDYACTRSSSLSTHMRMHTGEKPYKCNLCDYASTNNSDLSKHLRMHTGEKPYKCNLCDYASTRSSNLSTHMRMHTGEKPYKCNLCDYASTNNSDLSKHLRMHTGEKPYKCNLCDYASTRSSNLSTHMRMHTGEKPYKCNLCDYASTNNSDLSKHMRMHTGEKPYKCNLCDYASTRSSNLSTHMRMHTGEKPYKCNLCDYASTNNSDLSKHLRMHTGEKPYKCNLCDYASTRSSNLSTHMRMHTGEKPYKCNLCDYACTTNGYLSTHMRMHTGEKPYKCNLCDYACTRSSSLSTHMRMHTGEKPYKCNLCDYACTQSSSLSTHMRMHTGEKPYKCNLCDYASTNNSDLSSHMRIHTGEKPYKCNLCVYASTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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