Ccar011719.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
-
Assembly
GCA_035578175.1
Location
JAQMRL010000001.1:205132857-205150602[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 45 0.28 45 6.5 0.4 2 23 218 239 218 239 0.97
2 45 1.3e-05 0.0021 20.1 1.8 2 23 243 265 243 265 0.96
3 45 0.0057 0.91 11.9 0.8 2 23 273 295 273 295 0.93
4 45 4.3e-05 0.0068 18.6 0.6 1 23 302 325 302 325 0.94
5 45 0.0016 0.25 13.6 1.4 2 23 333 355 332 355 0.95
6 45 4.2 6.7e+02 2.8 0.5 2 23 362 381 362 381 0.71
7 45 0.00057 0.091 15.0 0.0 3 23 389 410 387 410 0.93
8 45 0.01 1.6 11.1 0.2 1 23 417 439 417 439 0.96
9 45 0.00059 0.093 15.0 1.4 1 23 445 467 445 467 0.99
10 45 0.091 15 8.1 0.7 1 12 473 484 473 490 0.82
11 45 2.5 3.9e+02 3.6 0.7 2 23 536 557 536 557 0.96
12 45 1.4e-05 0.0022 20.1 1.8 2 23 561 583 561 583 0.96
13 45 1.5e-05 0.0024 20.0 0.7 2 23 591 613 591 613 0.96
14 45 9.8e-06 0.0016 20.6 0.4 1 23 620 643 620 643 0.95
15 45 0.004 0.64 12.3 2.5 3 23 652 673 650 673 0.92
16 45 6 9.5e+02 2.4 0.5 2 12 680 690 680 699 0.73
17 45 0.005 0.8 12.0 0.1 3 23 707 728 705 728 0.93
18 45 0.0048 0.76 12.1 0.6 1 23 735 757 735 757 0.96
19 45 0.00034 0.054 15.7 1.8 1 23 763 785 763 785 0.99
20 45 0.018 2.8 10.3 1.6 1 22 791 812 791 812 0.96
21 45 0.64 1e+02 5.4 0.8 2 23 851 872 851 872 0.97
22 45 2.4e-05 0.0039 19.3 1.8 2 23 876 898 876 898 0.96
23 45 1.2e-05 0.0019 20.3 0.7 2 23 906 928 906 928 0.96
24 45 0.00017 0.027 16.7 0.5 1 23 935 958 935 958 0.95
25 45 0.00032 0.051 15.8 2.2 3 23 967 988 965 988 0.95
26 45 4.2 6.7e+02 2.8 0.2 2 16 995 1006 995 1014 0.69
27 45 0.0011 0.17 14.2 0.3 2 23 1021 1043 1020 1043 0.93
28 45 0.5 80 5.7 0.0 1 14 1050 1063 1050 1066 0.87
29 45 0.69 1.1e+02 5.3 0.3 2 23 1098 1119 1097 1119 0.96
30 45 0.00078 0.12 14.6 1.2 2 23 1123 1145 1123 1145 0.96
31 45 0.00026 0.042 16.1 0.4 2 23 1153 1175 1153 1175 0.96
32 45 4.8e-05 0.0077 18.4 0.5 1 23 1182 1205 1182 1205 0.94
33 45 0.00036 0.057 15.6 1.1 2 23 1213 1235 1212 1235 0.95
34 45 6.5 1e+03 2.3 0.2 2 12 1242 1252 1242 1261 0.82
35 45 0.00062 0.099 14.9 0.1 3 23 1269 1290 1267 1290 0.92
36 45 1.3 2.1e+02 4.5 0.2 2 23 1332 1354 1332 1354 0.90
37 45 6.3e-05 0.01 18.0 1.4 2 23 1358 1380 1358 1380 0.96
38 45 0.0025 0.4 13.0 2.1 2 23 1388 1410 1388 1411 0.95
39 45 0.0097 1.5 11.1 2.4 1 23 1418 1441 1418 1441 0.94
40 45 0.13 21 7.6 7.5 3 23 1450 1471 1448 1472 0.94
41 45 6.6 1.1e+03 2.2 0.2 3 11 1479 1487 1477 1497 0.84
42 45 5.2e-05 0.0083 18.3 0.2 3 23 1505 1526 1503 1526 0.94
43 45 0.01 1.6 11.1 0.2 1 23 1533 1555 1533 1555 0.96
44 45 0.00059 0.093 15.0 1.4 1 23 1561 1583 1561 1583 0.99
45 45 0.0046 0.74 12.1 1.1 1 21 1589 1609 1589 1610 0.95

Sequence Information

Coding Sequence
ATGCAATGCAAAGAAGTCTGCTCTAACCAAAGACTGAAAATATTTGCAGATTTTTATAACATGGGAGACTATAAGAGACAATACTCCTACTTAATGGACTTAATAAATGTAACTGAAGTCAAGAGGCGAAGACATGGAACTTACAAAAAAGCAGAATTGAGCCGTCGTCAAGCGACAGTTCATTATACTTTACCGAACGGAAAAGGAAAAATCGTTAATGTATGCAAAATAACATTTCAAGAAACTCATGGAATTACGAAAAGAGCTATTGAAACAGTGATAAATGCTAAGAAACGAGGAGATGTTGTCTACACTGAAAGAAATGGTAGCAGAAGTAAATACAGAAAGTATTCTGCGTTGGATGAAAAGGCTATTATGAAACATGTCAACAGTTTTCCTAGAGAACGCATTCACTATACTCGAAAAGCAAAAGATGACCGGGAATATCTCAGTGGGGatttaaattttcacaaattatttttagcaTTTAAAAAACTGAATCCGGTTACAAATGTAACAGCTTGTTATTATAGAAATATGGTGCAAGAAGAAATCGCATCTTATGGCGATGAACAAATTGCGAGGAATGTAATAGAAACAGCATCGGTTCATTTATCACATCCAAAGACTAGAAAAAGATACAGAGAGCGAACTTGTGAAGTATGTGGAGTGGTACTTGAAAATCATGTATTGTACAGAACACATAAAGCAACTCATGTTAACAGGACATGTGAAATTTGTGGCAAGACATTTCGTAAATTTTACCTTTTACAAAAACATAGAAGAAATGTCCATTCCATCGATCCGGTTTACGAGAGTTGTAAAATCTGTGGTAAAGTATTCAGAAGTGATGAATACGTAAAATTTCACATGAAACGAGTACATGCGTCTGGAGAAACAAAATACGACTGTGATATatgcaacaaaaaatttaagtcCAGGGCAACTCTTAATGCTCACAAAACCGTAGTTCATGCAGATGACTCCGAAGCCATTTCTTGTGATATTTGtggtaaaacattaaaacaccgtagattattattagaacatttaaaactaaaacattaTACTTCCGTAGATGCTGTTTGTGAAATATGCGGGAAACCAGTTAAAAACATCATCCGGCATCATAGGGTTATGCATTCAGAACGTACCGCCGTTAATTGTGATATCTGTGGCAAACCGTATGCCACTCCGAGaagtttaattaatcataaattaTACGTTCATTCCGAGGTGGAAAGAAAACACATCTGTCAAGTATGTGGAGCGTCTTTTAAAGCTGGCGGTACACTAAAACTTCATCTGATAACGCACCAAACGGAACGGAAATATAAATGCGATATTTGTAATAGCACATTTAAGTTAAAGAACGTTTTAAAAACTCATCTCAGAGTTCATAATTCAGACGAACCATATAAGTGCGATAAGTGTGGTGAAACATTCAGGTGGAAATCTACttTTGAAGTAATTCGTGGTATTCTGGGTGTGTTTAAGGTGAAAGAAGAATTAATTTGTGGTGATGACCAAATTGAAGAAGTTGTAGTAGAACCATCTTCAGTTTGTTTGCCACATATAAGATTTGACAACAGTGACAAAGAACGAACTTGTGAATTATGTGGAGTGATAGTCCAAAATCATATAATGTACAGAAAACATAAAGCTACTCATGTCAACAGGACATGCGATATTTGTGGTAAAACATTTCGTAAATTTTATCTTCTGCAAAAACACCGAAGGAATGTCCATTCCATCGACCCGATTTATGAGAGTTGTAAAATCTGTGGTAAAGTATTCAGAAGTGAGGAATACGTAAGAACTCACATGAAACGAGTGCATACACCTAAAGAAAGAACGTATGAATGtgaaaaatgtgataaaaaattCACATCCAAGGCAAATCTTGATGCCCACACGACAATAGTTCATGCAGATGGCTCTAATTCAGTTTGTTGCGATATTTGTGGTAAAACATTCAAACACCGTAGGTTATTATTACCGCATGTTAGACAAGTTCACTCGGCTCCTACCGACGCTGTCTGTGAAATATGTGGaaaacatgttaaaaatgttGTACGTCATCGTAAATTAATACATTCAGAACGTACAGGAATTAACTGCGATATATGTGGTAAACTGTATGCGAATCAAATGAGTTTAACTATTCATAAATCGATCATTCACACGCAGTTAGAAAGAAAACACATCTGTCAGATATGTGGAGCATCTTTTAAAACGGGCGGTGTGCTAAAATATCATCTCACGACTCACCAAACCGAACGGAATTTTAAATGCGACATCTGCAATAGTACTTTTAAGTTGAAGAGTGTTTTACAAACACATCGCAGAATTCATAATTCATATGAACCTTATCAGTGCGATAAGTGTAGTGAAACATTCCGGTGGAAATCATCGTATGATAAACATTTGAGAAAGTGTGTGGAAGAAGAATTAGCAAATTGTGGCGATGAACCAATTAAGGAAATTTTAATAGAACCATCTTCAGTTATTGTGCCACGTGTAAAATTTGACACCGGTGGCTACGAACGGAAATGTGAATTATGTGGAGTCGTAGTCGAAAATCATTTAATGTACAGAAAACATAAAGCTACTCATGTTAACAGGACGTGTGATGTTTGTGGCAAGACGTTTCGTAAATTTTACCTTCTACAAAAACATAGAAGAAATGTCCATAATATTGACCCAATGTATGAGAGTTGTAAAATGTGTGGTAAAGTATTCAGAAGTGAGGAATATTTAAGAGGTCATATGAAACGAGTTCATACATCTAAAGAAAGAACATATGAATGCgatatatgtaaaaaaaagtatacATCTAAAGTAAATCTTGATGCTCACAAGACAGTAGTTCATGCAGATAGTTCTCATGAAGTTTGTTGTAATATTTGTGGCAAAGCATTAAAACACCGCCGATTATTATTAGCGCACATGAGACAAGTTCACTTTTCTCCGGGAGATCCTGTTTGTGAAATATGCGGAAAACCCGTTAAAAACATCATCCGTCACCGTAGGCTTTTGCATTCTGAACGTACAACAATCAGCTGCGATATTTGTGGTAAACAATATGCCACTCAGAGAAGTTTAAGCAGTCATAAATTAAATGTTCATTCGGATGTAGAAAGGAAACATGTCTGTCAGATATGCGGAGCTTCTTTTAAAGTGCAAGAAGAAATAGCATCTTATGGCGATGAACAAATTGCGGGGAATGTAATAGGAACAGCATCGGTCCATTTATCGCATCCAAAGACTAGAAAAAGGTACAAAGAGCAAACTTGTGAAGTATGTGGACTGGTACTTGAAAATCATAATGTGTACAGAACTCATGTAGCAACTCATGTTAACAGGACATGTGAAGTTTGTGGCAAAACATTTCAAGAATTATATCGTTTACGAAAGCACAGAAGAAATGTCCATTCCATCGATCCATTTTATGAGAGTTGTAAAATTTGTGGTAAAGTATTCAGAAGTGATGAGTACGTAAAAGGTCACATGAAACGAGTACATGCGTCTGTAGAAACGAAATACGACTGTGATATAtgcgaaaaaaaatttaaaacgaagGCATCTCTTAATGTTCACAAGACCATAGTTCATGCAGATGACTCTGAAGCCATTACTTGTGATATTTGTGGCAAAACATTAAAACACCGCAGATTATTAATAGAACATATAAAACTAAAACATGTTACTTCTGTAGATGCTGTTTGTGAAATATGCGGGAAACCTGTTAAAAACATCGTCGAGCATCATCGGGTTATGCATTCAGAACGTACTGCCATTAACTGTGATATCTGTGGCAAACCATATGCCACTCGCAgaagtttaattaaccataaattATACGTTCATTCCGAGGTGAAAGAAGAATTTTTGATTCGAGGTGAACAACATATCGAGGAAAATGTAAGACAAGTAGAATTAGTTAATGTATTTCgtcgaaaaattaaaaagaaaatagggGTGACAGAACGAACTTGTGAATTCTGTGGAATTGTAGTAGAAAATCATAATGCGTACAGAACTCATGTAGCAGCAACTCATGTTAACAGGACATGTGAAATTTGTGGCAAGACATTTCGAGAATTATATCGCCTACGAAAGCATAGAAGAAACGTTCATTCCATCGATTTGGTTTATGAGAGTTGTAAAATATGCGGTAAAGTATTCAAAAATGAGGAATACGTAAAATTTCACATGAAACGAGTTCATCATTCATCTAGAGAAAGAATATATGACTGTGAAAAATGTGAcaaaaaattcatgtttaaacCAGATCTTTTACATCACAAGACTGTTATGCATGCCGATGACTCGGATGCAGTTTGTTGCCATATTTGTGGCAAAACATTAAAACACCGCCGGTTATTATTAGGGCACATAAAACAAACTCACCATAAAACTGGGGAAACCATTTGTGAAATATGCGGGAAATCTATTAAAGATATAATCAGCCATCATAAGATTGTACATTCGGAACGTAAATTAGTTAACTGTGATATATGCGGTAAACAATATGCTAGTAAGAGTTCTTTAAAAGATCACCAATTAAACGTTCATTCCGAGGTGGAAAGAAAACACATCTGTCAAGTATGTGGAGCGTCCTTTAAAGCAGGCGGTACACTAAAACTTCATCTGATAACGCACCAAACGGAACGGAAATATAAATGCGATATTTGTAATAGCACATTTAAGTTGAAGAATGTTTTAAAAACTCATCTCAGAGTTCATAATTCAGAAGAACCATATAAGTGCGATAAGTGTGGTGAAACATTCAGGTGGAAATCGACATACGATAAACATTTGAAAAGTTGTGTTGAATCTGAATCTTCTTCATAA
Protein Sequence
MQCKEVCSNQRLKIFADFYNMGDYKRQYSYLMDLINVTEVKRRRHGTYKKAELSRRQATVHYTLPNGKGKIVNVCKITFQETHGITKRAIETVINAKKRGDVVYTERNGSRSKYRKYSALDEKAIMKHVNSFPRERIHYTRKAKDDREYLSGDLNFHKLFLAFKKLNPVTNVTACYYRNMVQEEIASYGDEQIARNVIETASVHLSHPKTRKRYRERTCEVCGVVLENHVLYRTHKATHVNRTCEICGKTFRKFYLLQKHRRNVHSIDPVYESCKICGKVFRSDEYVKFHMKRVHASGETKYDCDICNKKFKSRATLNAHKTVVHADDSEAISCDICGKTLKHRRLLLEHLKLKHYTSVDAVCEICGKPVKNIIRHHRVMHSERTAVNCDICGKPYATPRSLINHKLYVHSEVERKHICQVCGASFKAGGTLKLHLITHQTERKYKCDICNSTFKLKNVLKTHLRVHNSDEPYKCDKCGETFRWKSTFEVIRGILGVFKVKEELICGDDQIEEVVVEPSSVCLPHIRFDNSDKERTCELCGVIVQNHIMYRKHKATHVNRTCDICGKTFRKFYLLQKHRRNVHSIDPIYESCKICGKVFRSEEYVRTHMKRVHTPKERTYECEKCDKKFTSKANLDAHTTIVHADGSNSVCCDICGKTFKHRRLLLPHVRQVHSAPTDAVCEICGKHVKNVVRHRKLIHSERTGINCDICGKLYANQMSLTIHKSIIHTQLERKHICQICGASFKTGGVLKYHLTTHQTERNFKCDICNSTFKLKSVLQTHRRIHNSYEPYQCDKCSETFRWKSSYDKHLRKCVEEELANCGDEPIKEILIEPSSVIVPRVKFDTGGYERKCELCGVVVENHLMYRKHKATHVNRTCDVCGKTFRKFYLLQKHRRNVHNIDPMYESCKMCGKVFRSEEYLRGHMKRVHTSKERTYECDICKKKYTSKVNLDAHKTVVHADSSHEVCCNICGKALKHRRLLLAHMRQVHFSPGDPVCEICGKPVKNIIRHRRLLHSERTTISCDICGKQYATQRSLSSHKLNVHSDVERKHVCQICGASFKVQEEIASYGDEQIAGNVIGTASVHLSHPKTRKRYKEQTCEVCGLVLENHNVYRTHVATHVNRTCEVCGKTFQELYRLRKHRRNVHSIDPFYESCKICGKVFRSDEYVKGHMKRVHASVETKYDCDICEKKFKTKASLNVHKTIVHADDSEAITCDICGKTLKHRRLLIEHIKLKHVTSVDAVCEICGKPVKNIVEHHRVMHSERTAINCDICGKPYATRRSLINHKLYVHSEVKEEFLIRGEQHIEENVRQVELVNVFRRKIKKKIGVTERTCEFCGIVVENHNAYRTHVAATHVNRTCEICGKTFRELYRLRKHRRNVHSIDLVYESCKICGKVFKNEEYVKFHMKRVHHSSRERIYDCEKCDKKFMFKPDLLHHKTVMHADDSDAVCCHICGKTLKHRRLLLGHIKQTHHKTGETICEICGKSIKDIISHHKIVHSERKLVNCDICGKQYASKSSLKDHQLNVHSEVERKHICQVCGASFKAGGTLKLHLITHQTERKYKCDICNSTFKLKNVLKTHLRVHNSEEPYKCDKCGETFRWKSTYDKHLKSCVESESSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-