Ccar058501.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:655166-682837[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.087 1.6e+02 4.1 0.2 18 39 175 193 173 197 0.84 2 9 1.2 2.2e+03 0.5 1.8 4 29 190 214 187 227 0.76 3 9 0.12 2.2e+02 3.7 0.4 18 39 231 249 219 257 0.84 4 9 0.0069 13 7.7 1.4 15 30 256 273 248 280 0.72 5 9 0.00082 1.5 10.6 0.5 6 28 276 297 271 301 0.83 6 9 0.00032 0.6 11.9 1.5 3 39 301 333 299 338 0.86 7 9 0.0016 3 9.7 1.0 4 39 330 362 327 369 0.77 8 9 0.15 2.9e+02 3.4 1.1 18 38 372 389 360 394 0.81 9 9 0.11 2e+02 3.9 0.4 17 38 399 421 389 424 0.84
Sequence Information
- Coding Sequence
- ATGGAAGTTAAACAGTTTGAAACAAAGATGAAAACTGAAGTGGTGCATCCAGAAATTGAATCGGAAGGTGAGCATGAAGAGTTGGACGGTAGTAATATTTCTCACTTGGATGTAAATCCATTCGATTTTGTTTCTGTGAAAATGGAACAGGAATTGCAAGCTGAGCATGTAGACTTGGAGACTGGTGAAATTTCTGAGTCAGATCCAAATACATTTGATTTTGAGTTTGTAAAAGTGAAACAGGAAATTGAACAGGAGGATGATTTGAGGGCAGGTGAAGACAACAGCTGGGCATCTGAACTTCTGGAAAATAACTCCATTAAAACAGAAAAGGATTCGGGTGATTATGAAGAGGTAGATTTTAATGTGGAAAAATCAAATGGGCGATTGTTGTACATGAATAGAGTCTATAGAGCTTATGAAGGCAGTGAATGTAGTACAACACATGGTACCATAAGTGGAGATTATAAATTAAGTAACCGGACGATTCAGATGGCATCACGTGTTGGTGCTAGGCCATTTAAATGTGATATCTGTGGAAATGAATTTAGACAGAGTAGTCACCTAAAAGATCACATGTTGGTGCATTCTGACGCTAAGCCATTCGAATGTAATGTCTGTTTAAAAGCATTCAAACATAAATATTATCTCGCTAAACACATGTTAATACATACCGGTATAAAACCGTTCAAATGCGATTTGTGTCAAAGTGAATTTTCGCAGAGTAGTACGTtaaaaatacacatgttaacGCATAGTGACGTTAAACAATTTCAGTGCAATTTGTGTCAAAAAGAATTCAAACGGAACTCCGACGTAAGAACACATATGTTAACGCATAGTGACGATAAACAATTCAAATGCAATTTGTGCGAAAAAGAATTCAAacgtaactttgatttaaaaaaacacatgttAAAGCATAGTAACGGTAAACGAATTCAGTGTAATTTGTGCGATAATGAATTTACGTCGAGAAATCAGTTAAAATCGCACATGTTATTATTACATGCCAATGCTAAGCCGTTTAAGTGTGATATCTGCGAAAAAAAATTCGCTCGCAAATCTGAACTGAATCAGCACATGTTAATACATAGCGGCATTAAACCATTTCAATGCGATGTTTGTCGGAAAGAATTTACGCACAAATCTAATTTAACCGTTCACGTGTTAACGCATAGTAGTGCTAAGCCATTCACGTGCGATATCTGTCCGAACGTGTACGCGCAAAAACGTTATCTCACCAAACACATGTTGACACATAGTCAACAAGTTAAACCGACGAAATGTCGTGATGATGACAGCCTTacgtga
- Protein Sequence
- MEVKQFETKMKTEVVHPEIESEGEHEELDGSNISHLDVNPFDFVSVKMEQELQAEHVDLETGEISESDPNTFDFEFVKVKQEIEQEDDLRAGEDNSWASELLENNSIKTEKDSGDYEEVDFNVEKSNGRLLYMNRVYRAYEGSECSTTHGTISGDYKLSNRTIQMASRVGARPFKCDICGNEFRQSSHLKDHMLVHSDAKPFECNVCLKAFKHKYYLAKHMLIHTGIKPFKCDLCQSEFSQSSTLKIHMLTHSDVKQFQCNLCQKEFKRNSDVRTHMLTHSDDKQFKCNLCEKEFKRNFDLKKHMLKHSNGKRIQCNLCDNEFTSRNQLKSHMLLLHANAKPFKCDICEKKFARKSELNQHMLIHSGIKPFQCDVCRKEFTHKSNLTVHVLTHSSAKPFTCDICPNVYAQKRYLTKHMLTHSQQVKPTKCRDDDSLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283832;
- 90% Identity
- iTF_00283832;
- 80% Identity
- iTF_00283832;