Ccar053286.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:14603190-14607535[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 3.1 9.7 0.9 18 29 79 90 73 102 0.84 2 13 0.0014 2.7 9.9 0.8 17 36 106 126 95 129 0.74 3 13 0.14 2.7e+02 3.4 0.8 17 36 134 154 131 157 0.77 4 13 0.01 20 7.1 0.4 17 39 162 181 151 188 0.87 5 13 0.045 84 5.1 0.6 18 35 191 209 183 214 0.76 6 13 0.037 71 5.3 2.1 6 33 208 235 203 240 0.75 7 13 0.017 32 6.4 1.2 17 39 246 265 235 271 0.80 8 13 0.088 1.7e+02 4.1 0.2 17 38 274 292 267 297 0.84 9 13 0.077 1.5e+02 4.3 1.3 18 30 303 317 291 325 0.78 10 13 0.049 93 4.9 0.2 18 33 331 346 328 352 0.83 11 13 0.38 7.1e+02 2.1 0.2 18 38 359 376 357 380 0.75 12 13 0.16 2.9e+02 3.3 0.4 17 34 386 403 380 408 0.73 13 13 0.015 28 6.6 1.6 18 39 415 433 411 441 0.90
Sequence Information
- Coding Sequence
- ATGACAAATGAAGCTGACAAATGGCCGTTGCATCACAATGAAGTTGATTCCATTAAAACTgaaaaggatGGAGATGGTTCTGAAGAGATGATTGATAATCTAGGAGATAGTTCAACTGAGGAATTGTCGAATATAAATGAAGACGGTAATTGGGTTAGTGGCGATAAGGACGGTGAATGTGATACAAGTGATATTACGATAAATCGCGATTCGCAATGCAATATTAAACCGTTTAAGTGTAACATTTGTCAGAAGGAATTTTCCCGAAAGAATTATCTCGGCTATCATTTTTCATCGCATTTCAGCGTTAAGGAATTTAAGTGTAACGTATGCGATAAAGAATTTACTAGTAAAAGTAGCCTAACGAGTCATTTGGTGATGCATAGTGGTATTAAGCGATTTAAATGCGAGGTTTGCGAgaaggaatatttttttaaaaatcatttgacCAATCACATGTTGGTACACAGCGCTGCGAAACCATTCAAATGCGATATTTGCGATAAACGATTCCCTTATAAAAGTAATTTGACCAATCACCTGTTAATCCATAGTGGTGctaaaccgttcaaatgtaatTTATGCGATAAAGAATTcgcgtttaaaagtattttgacgAATCACATGTCGATGCATAGTCGTGCGAAATCATTCAAATGTGACGTGTGCGAAAAGGAGTTTAAACATAAAAGCGATGTTACGAGTCACATGGTAGTTCATAGTGCCGATAAACCGTTCAAATGCGAATCGTGTCGTAAAGAATTCACGCGTAAACGTAATCTAGATAGTCATTTATTGACGCATAATAGCGTCAAACTATATAAGTGCGATATATGCGATAAAGAATTCACGTTCAAAAGTAATCTCGCGAATCACGAGTTGATGCATTCGCGCGCCAAACCGTTCGATTGTAATGTGTGCCAAAAAAAATTCACATCGAAACGCGATCTTAATAATCACATGTTAATTCATATAGGTGTtaagccatttaagtgtgatATTTGCGATAAGGAATTCCGGTATAAGAATAGTTTAACCGGGCATATGTTTGTTCATCGCGGTGTCAGGCCGTTTAAGTGCGATATTTGCGATGAGCAATTCACGCAGCGAAAACATCTCAATAGTCATCTGGTCGTGCATAGCGCTTCAAAACCGTTCAAATGCAAAGTTTGCGATAAGGAATTTCGGTTTAAAAGCAGTCTAACCAATCATATGTTTTTACATAGTGGTATCAAACCGTATAAGTGCGATATATGcaaaaaagaatttattaaaaaaagcggTTTTAAACGGCATTTGTTGTTGCATAACGGTACGATGTGCGTGTGA
- Protein Sequence
- MTNEADKWPLHHNEVDSIKTEKDGDGSEEMIDNLGDSSTEELSNINEDGNWVSGDKDGECDTSDITINRDSQCNIKPFKCNICQKEFSRKNYLGYHFSSHFSVKEFKCNVCDKEFTSKSSLTSHLVMHSGIKRFKCEVCEKEYFFKNHLTNHMLVHSAAKPFKCDICDKRFPYKSNLTNHLLIHSGAKPFKCNLCDKEFAFKSILTNHMSMHSRAKSFKCDVCEKEFKHKSDVTSHMVVHSADKPFKCESCRKEFTRKRNLDSHLLTHNSVKLYKCDICDKEFTFKSNLANHELMHSRAKPFDCNVCQKKFTSKRDLNNHMLIHIGVKPFKCDICDKEFRYKNSLTGHMFVHRGVRPFKCDICDEQFTQRKHLNSHLVVHSASKPFKCKVCDKEFRFKSSLTNHMFLHSGIKPYKCDICKKEFIKKSGFKRHLLLHNGTMCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283803;
- 90% Identity
- iTF_00283803;
- 80% Identity
- iTF_00283803;