Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00051 0.96 11.3 0.2 16 38 9 32 3 32 0.87

2 5 0.0086 16 7.4 0.2 17 34 38 57 33 60 0.82

3 5 0.00091 1.7 10.5 0.2 14 38 63 88 56 88 0.77

4 5 0.31 5.9e+02 2.4 2.0 18 38 95 116 91 120 0.83

5 5 0.0062 12 7.8 0.5 17 35 122 142 111 144 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00051	0.96	11.3	0.2	16	38	9	32	3	32	0.87
2	5	0.0086	16	7.4	0.2	17	34	38	57	33	60	0.82
3	5	0.00091	1.7	10.5	0.2	14	38	63	88	56	88	0.77
4	5	0.31	5.9e+02	2.4	2.0	18	38	95	116	91	120	0.83
5	5	0.0062	12	7.8	0.5	17	35	122	142	111	144	0.78

Coding Sequence: ATGTTATTGCATACCAATTCGAAGCCGTTCAAGTGCGATTTATGCGGAAAAGAATTTACGAAAAAAGCGTCGCTCAGTAGCCAAATGTTGTCACATAGTGACGCTAAACCTTTTAAATGCGAATTGTGCCAAAAGGAATTCACGGAGAAATATTCGCTGAATACTCATATGTTTTTGCATGGCGATTCGAAGCCGTTCAAGTGCGATTTCTGCGGGAAAGAATTTATGCAAAAATCGTCGCTGAGTAGccacatgttatcacatagtggcgCTAAGCCATTTAAATGTGATTTGTGTCCGAACAAATACAGACACAAATCTCATCTAACCAAGCACATTTTGTCACATAGTGAGGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCGCGCAGAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTcgaagccattcaagtgtgattaA
Protein Sequence: MLLHTNSKPFKCDLCGKEFTKKASLSSQMLSHSDAKPFKCELCQKEFTEKYSLNTHMFLHGDSKPFKCDFCGKEFMQKSSLSSHMLSHSGAKPFKCDLCPNKYRHKSHLTKHILSHSEAKPFKCELCQKEFAQKYSLNTHMLLHADSKPFKCD

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00283780; iTF_00283784; iTF_00283982; iTF_00283983; iTF_00283984;
90% Identity: iTF_00283780; iTF_00283983; iTF_00283984;
80% Identity: iTF_00283780; iTF_00283983; iTF_00283984;