Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.015 27 6.6 0.4 17 30 74 89 67 96 0.76

2 10 0.66 1.2e+03 1.3 0.8 15 30 100 116 90 124 0.72

3 10 0.00042 0.79 11.6 0.2 10 34 124 149 115 156 0.77

4 10 0.26 4.9e+02 2.6 0.2 18 31 159 172 148 182 0.82

5 10 0.0073 14 7.6 0.2 18 39 187 205 179 209 0.87

6 10 0.027 51 5.8 0.1 18 38 215 236 212 236 0.79

7 10 0.34 6.3e+02 2.3 0.2 18 39 243 261 240 268 0.86

8 10 0.11 2.1e+02 3.8 1.0 18 32 271 286 262 292 0.79

9 10 0.0019 3.6 9.4 0.3 15 31 296 314 287 324 0.72

10 10 0.00048 0.9 11.4 1.4 17 41 326 347 316 348 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.015	27	6.6	0.4	17	30	74	89	67	96	0.76
2	10	0.66	1.2e+03	1.3	0.8	15	30	100	116	90	124	0.72
3	10	0.00042	0.79	11.6	0.2	10	34	124	149	115	156	0.77
4	10	0.26	4.9e+02	2.6	0.2	18	31	159	172	148	182	0.82
5	10	0.0073	14	7.6	0.2	18	39	187	205	179	209	0.87
6	10	0.027	51	5.8	0.1	18	38	215	236	212	236	0.79
7	10	0.34	6.3e+02	2.3	0.2	18	39	243	261	240	268	0.86
8	10	0.11	2.1e+02	3.8	1.0	18	32	271	286	262	292	0.79
9	10	0.0019	3.6	9.4	0.3	15	31	296	314	287	324	0.72
10	10	0.00048	0.9	11.4	1.4	17	41	326	347	316	348	0.86

Coding Sequence: atgttcgtgtcgcgtccggtagtgGATTCAGACGATTCTGACGTGGTCGATTCGAATTTAGACAAATCTAGTGAGCAACTGTTGTGCATTAATAGAGACAATAGTTACGGTAGTGATCATGAAGGCATTGAATCTGGTAGAACACATGTTACCAGAAGTAGTGATTTTAAATTACGTGGCTCAACTAATAACATGGTATCACGTAACTGTGCTAAGCCATTTAAATGTGATTTGTGTCGAAAGGAATTCACGCGTAAAGCTACGCTAAACTATCACATGTTGATACACAGCGGTGATAAGCCGTTTAAATGTAACGTGTGCCTGAAAGAATTCAGACTGAAATTTCATCTGACCGGACATATGTTGTTACACAGTGACGATAAACCGTTCAAGTGCGATTTATGCGAAAAAGAATTCAAACGGAAAAGTGAACTAACATCTCATGTGTTAATGCATACCAGTACGGAACCGTTCAAGTGCGATTTGTGCGAAAAGGAATTCAGATTTAAAGGTAGCGTAGACAGACACATGTTATCTCATAATGGTGCTAAGCCATATAAGTGCGATTTCTGCGATAATAAATTCACGCAGAAATCGACGTTAATTACTCATTTATTAACGCATAGCGGCGTTAAACCATTTAAGTGCGATACGTGCGGAAAAGAATTCACGCAGCGAGCTACGTTAAGCAGTCATTTATTAACGCATAGCGGTGTTAAACCGTTTAAATGCGATCTATGCGATAATGGATTCACGCAGAAATCTACGCTAAGCTATCACATGTTATCGCATAGCGGTACAAAACCGTTTAAATGCGGTTTGTGTCGTAAGGAATTCAGACAGAAATCTCATCTGACCGGACATATGTTGTTACACAGTGATGCGAAACCGTTTAAGTGTGATCTTTGTGAGAAAGAATTTAAACGGAAAAGTGAACTAACTGTACATTTGTTAATACATAACAGTAGCGAGCCATTCAAATGCGATTATTGTCAAAAGCAATATACCCAGAAACGTACTCTAGCCAGACACTTGAAATCGCATGCTGATGTTAAATGA
Protein Sequence: MFVSRPVVDSDDSDVVDSNLDKSSEQLLCINRDNSYGSDHEGIESGRTHVTRSSDFKLRGSTNNMVSRNCAKPFKCDLCRKEFTRKATLNYHMLIHSGDKPFKCNVCLKEFRLKFHLTGHMLLHSDDKPFKCDLCEKEFKRKSELTSHVLMHTSTEPFKCDLCEKEFRFKGSVDRHMLSHNGAKPYKCDFCDNKFTQKSTLITHLLTHSGVKPFKCDTCGKEFTQRATLSSHLLTHSGVKPFKCDLCDNGFTQKSTLSYHMLSHSGTKPFKCGLCRKEFRQKSHLTGHMLLHSDAKPFKCDLCEKEFKRKSELTVHLLIHNSSEPFKCDYCQKQYTQKRTLARHLKSHADVK

Sequence clustering based on sequence similarity using MMseqs2