Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00058 1.1 11.1 1.0 10 36 38 65 29 67 0.79

2 7 0.018 34 6.3 0.2 18 32 74 90 71 99 0.77

3 7 0.015 28 6.6 1.0 13 36 97 117 85 124 0.69

4 7 7.9 1.5e+04 -2.1 0.2 17 25 129 137 119 141 0.61

5 7 6e-07 0.0011 20.7 1.1 11 37 152 179 146 179 0.85

6 7 0.084 1.6e+02 4.2 0.5 14 29 182 197 180 207 0.79

7 7 0.009 17 7.3 2.4 17 30 213 231 202 236 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00058	1.1	11.1	1.0	10	36	38	65	29	67	0.79
2	7	0.018	34	6.3	0.2	18	32	74	90	71	99	0.77
3	7	0.015	28	6.6	1.0	13	36	97	117	85	124	0.69
4	7	7.9	1.5e+04	-2.1	0.2	17	25	129	137	119	141	0.61
5	7	6e-07	0.0011	20.7	1.1	11	37	152	179	146	179	0.85
6	7	0.084	1.6e+02	4.2	0.5	14	29	182	197	180	207	0.79
7	7	0.009	17	7.3	2.4	17	30	213	231	202	236	0.76

Coding Sequence: ATGGGTTTGAATTCCAATAACCCAGGATATATGATGGGCGAGATTTTTCAAATTCATGAGCTGTGGATGCTTCTTGATAAGGAACAtgcaagatatttaaaatttggcaataaatcgACCGAAAGACAAGCCTTCTCTTGTGAAGTTTGCAAAAAAATATTCGCAAGGAAAAACCATTTGACGAATCATCTTCTTATACACAGCGGTGTTAAACCATTTAAATGTGATTTATGTGATAAAGCATTCTCTCGTAAAGATCATTTACAAGCGCATACATTAACACATGCGCATGTCAAGAAATTCAGTTGTGATATCTGCGATAAACGATTCACAAGGAAAGATAATTTAAATCTTCATCTATTAAATCATGCGTCACCAAATCCATTCGCTTGCGATTTATGCAAAAGTAAATTCCCATGTAAAGATCAACTGGATGAACATATGTTAAGCCATTCCAGTGATCAACGTTTTAAATGCAATATCTGCGAAAAAGAATTTTCACGTAAAGGTACGTTAACTACGCATACTTTAATTCATTCCAACAAAAAACGATACAAGTGCAACGTCTGTCCGAAAGAATTTGTTCAAAAAATTGATCTAACGAGACATTCGTTGTGTCACACCGGGAAAAAACCGTTCAAGTGCGAAATTTGTTCGAAAGAATATACTCGAAAAAGTTATCTTAAAGTTCATGAGATTAAGGGTTGTAATCAAGCATAA
Protein Sequence: MGLNSNNPGYMMGEIFQIHELWMLLDKEHARYLKFGNKSTERQAFSCEVCKKIFARKNHLTNHLLIHSGVKPFKCDLCDKAFSRKDHLQAHTLTHAHVKKFSCDICDKRFTRKDNLNLHLLNHASPNPFACDLCKSKFPCKDQLDEHMLSHSSDQRFKCNICEKEFSRKGTLTTHTLIHSNKKRYKCNVCPKEFVQKIDLTRHSLCHTGKKPFKCEICSKEYTRKSYLKVHEIKGCNQA

Sequence clustering based on sequence similarity using MMseqs2