Ccar058502.2
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:694570-708402[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.032 60 5.5 0.1 17 38 176 198 172 198 0.84 2 10 8.1 1.5e+04 -2.2 0.1 18 26 205 213 204 219 0.82 3 10 0.024 44 6.0 2.0 4 38 220 254 217 255 0.73 4 10 0.53 9.9e+02 1.6 0.1 17 29 260 272 257 275 0.83 5 10 0.00044 0.82 11.5 0.5 4 31 276 302 273 310 0.77 6 10 0.0031 5.9 8.8 0.4 3 30 303 329 301 339 0.80 7 10 0.009 17 7.3 0.4 8 30 336 359 329 370 0.72 8 10 0.0051 9.6 8.1 0.2 18 38 373 390 369 395 0.89 9 10 0.024 45 5.9 1.3 2 29 386 412 385 426 0.83 10 10 0.0018 3.4 9.5 2.8 12 39 424 448 415 452 0.75
Sequence Information
- Coding Sequence
- ATGGAAGTTGAACAGGTTGTGTCAAAGATAAAAACTGAAGAGGTGCATACAGAAATGCAGGAATTGAAAGGTGAATTTGAAGACTTGGACACAGGTGAAATTTCGCAGCCAGATCCGATTGCTGGTGATTTTATTCCTGTGAAAGTAAAACAGCAATTGAAAGCTGAGCATGAAGACTCGGAGACTGGTGAAATTTCTCAGTCAGATCAAATTGGCTGTGATTTTGAGTTTGTGAAAGTGAAACAGGAAATTGAACAGGAGGATGATTTGAGGGCAGTTGAAGAGAACAACAGCTGGGCATCTGATCCTCTGGAAAATAACTACATTAAAACAGAAAAGGATTCAGGCGATTGTGAAGAGGTAGATGTTAATGTGGAAAAATCTAATGGGCAACTGTTGTATACGAATAGAGACTATAGTGATCATGAAGGCAGTGAATGTAGTGCAAAACGTGTTACGATAAGTAGCGATTCTAAATTAAACAGCCGGACGTCACAGATGTTATCTAATGGTAGTGCTGAGCGATTTAAATGCGATATCTGTGATAAAGGATTCAAACGAAAGTATGATCTGACTCAACACTTGTTAACGCATGACGGTGTAAAGCCATTTAAATGTGACGTGTGTGAAAATGAATTTATACAAAGAGGTCACTTAAAAGATCACATGTTATTACATAGTGATACGAAGCCATATAAATGTAATGTCTGCCGAAAAGGATTTAATTGGAGATCGAGTTTGACGAAACATTTGGTAACGCATACCGGTATAAAACGATTCAAATGCGATTTGTGTCAAAATGAATTCTCACAGCGAGGTCACTTAAAAGATCACATGTTATTGCATAGTGACACTAAGCCATTTAAGTGTAATGTATGCGGAAAAGAATTTAAACGTAAATCCGATGTGAAAATACACATGTTAACGCATAGCGATGCGAAGCGATTTCAATGCGGTTTATGTCGAAAAGAATTTAAACGTAACTCTGACGTAAAATTACACATGTTAACGCATACCGatgttaaacaatttaaatgcGATTTGTGTCGTAAAGAATTTAAACGTAAATTCGACGTGAAAATACATATGTTAACGCATACCGGCGTGAAACCGTTCAAATGTGATTTGTGTCGGAAAGAATTTTCGCAGAGTAGTACGCTAAAATCTCACGTGTTATTACATTCCGATGCTAAGCCATTCGTGTGTAACGTCTGCCAAAAAGCGTTTAAAGATAAATATTATCTGAATAAACACTTGTTAATGCATACCGGTATAAAACCTAAAATTAAATGCCATTTGTGCGAAAAAGAATTTAGAAACAAATCTAATTTAACCGTTCACATGTTATCGCATAGTATCGCTAAGCCAATCACTTGCGATTTTTCTCCAAATTGA
- Protein Sequence
- MEVEQVVSKIKTEEVHTEMQELKGEFEDLDTGEISQPDPIAGDFIPVKVKQQLKAEHEDSETGEISQSDQIGCDFEFVKVKQEIEQEDDLRAVEENNSWASDPLENNYIKTEKDSGDCEEVDVNVEKSNGQLLYTNRDYSDHEGSECSAKRVTISSDSKLNSRTSQMLSNGSAERFKCDICDKGFKRKYDLTQHLLTHDGVKPFKCDVCENEFIQRGHLKDHMLLHSDTKPYKCNVCRKGFNWRSSLTKHLVTHTGIKRFKCDLCQNEFSQRGHLKDHMLLHSDTKPFKCNVCGKEFKRKSDVKIHMLTHSDAKRFQCGLCRKEFKRNSDVKLHMLTHTDVKQFKCDLCRKEFKRKFDVKIHMLTHTGVKPFKCDLCRKEFSQSSTLKSHVLLHSDAKPFVCNVCQKAFKDKYYLNKHLLMHTGIKPKIKCHLCEKEFRNKSNLTVHMLSHSIAKPITCDFSPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283822;
- 90% Identity
- iTF_00283822;
- 80% Identity
- iTF_00283822;