Ccar058466.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:86439-99571[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 7.4 8.5 0.1 16 39 173 193 167 197 0.87 2 10 0.015 29 6.6 0.1 18 41 203 223 198 225 0.87 3 10 0.00083 1.6 10.6 0.8 18 41 231 251 227 253 0.86 4 10 0.051 96 4.9 0.8 18 38 259 276 255 283 0.87 5 10 0.52 9.7e+02 1.7 2.4 2 38 272 308 271 308 0.77 6 10 0.0006 1.1 11.1 0.7 18 40 315 334 312 337 0.92 7 10 0.066 1.2e+02 4.5 0.9 18 39 343 361 339 368 0.83 8 10 0.0012 2.2 10.1 1.7 6 38 360 392 355 392 0.86 9 10 6.1e-05 0.12 14.2 0.3 18 41 399 419 393 420 0.83 10 10 0.0084 16 7.4 2.5 17 39 426 445 423 449 0.88
Sequence Information
- Coding Sequence
- ATGGAAGATCAACAATTTGAGTCAACGATAAAAACTGAAGTTGAGCACACCGAAATTTTGTTGAAAGAGGAATATGAAGATGAGGACGCTGGTGAACATTCCGAGTCAGATCCAGTGGATTTTGAGTTTGTGAAGGTGAAACAGGAATCACCAGACGAAGATGAATTGGCAGCAGCTGAAGATAAGAGGTGGTCTTCTGATCCTCTGGCAATCAACTGCATTAAAACTGAAAAGgaATCACCAGACGAGGATGAGTTGACGGCAGTTGAAGATAAGAGGTGGTCTTCTGATCCTCTGGCAGTTAACTGCATTAAAACTGAAAAGgATTCTAGTGGTTCGGAAGAGGTCGATTCCGATTTAGATGGATATAGCGGGGAACTGTCGCGTGATAATAGAGTTTATACGTACCTTAGTGGTGATAAGAATAGCGAACATGGTGCGACTTATATCGCCATAAATAGCGATTCCAAATTAAGTAACCAGACCGGGAATTTATCGCTTGGCGATGATAAGCCATTTTTTAATTGTGATATCTGCGGAAAGGAATTTAACCTCAAAACTAATCTGAACAAACATTTGTTAATACATAATGGTGCTAAACCATTTAAATGCGATTTGTGTTTGAAAGAATTCAGAGAGAAATCGAATTTAACGAAACATATGGTATCGCATAGCGGTGTAAGGCGATTTAAATGTGAAATCTGTCAAAAGGCGTTTAGTCTTAAAACTAATTTAACGAAACATATGGTATCGCATAGCGGTGTAAGGCGATTTAAATGTGAAATCTGTCAAAAGGCGTTTAGTCTTAAAACTAATTTGTACAAGCATTCGTTAATTCATAGCGGTACGAAGCCGTTTAAGTGCGATTTGTGCGATAAGGAGTTCAGATGTAAATTCGATAAAACGAGGCACATGTTGTCGCATAACGGCGTTAAACCGTTCGAATGCGATATCTGTCGAAAAGTATTCAGCCAGAAAAATTGTCTCACCAATCATTTAGTTATACATACCGGTGCTAAAccgtttaaatgtaatttatgtgGAAAACGGTTTGGATGGAAAAGCGGTCTCGCCAATCACATGTCATTGCATAACGATTCGAAACCGTTGAAATGCGGTTTGTGTCGAAAGGAGTTCAAGTGGAAACAGAGTCTAACTAGTCATATGTCATCGCATAACGACGctaagccatttaagtgtgatttgtgtcggAAGGAGTTCAAACGGAAATCGAATTTAACGAGTCATATGGTATCGCATAGCGGTGTTAAGCGATTTAAATGCAAGATCTGCGATAAGGCGTTCAGTCACAGATCTAATATGAACAAGCACTTATTAATACATAAGTGA
- Protein Sequence
- MEDQQFESTIKTEVEHTEILLKEEYEDEDAGEHSESDPVDFEFVKVKQESPDEDELAAAEDKRWSSDPLAINCIKTEKESPDEDELTAVEDKRWSSDPLAVNCIKTEKDSSGSEEVDSDLDGYSGELSRDNRVYTYLSGDKNSEHGATYIAINSDSKLSNQTGNLSLGDDKPFFNCDICGKEFNLKTNLNKHLLIHNGAKPFKCDLCLKEFREKSNLTKHMVSHSGVRRFKCEICQKAFSLKTNLTKHMVSHSGVRRFKCEICQKAFSLKTNLYKHSLIHSGTKPFKCDLCDKEFRCKFDKTRHMLSHNGVKPFECDICRKVFSQKNCLTNHLVIHTGAKPFKCNLCGKRFGWKSGLANHMSLHNDSKPLKCGLCRKEFKWKQSLTSHMSSHNDAKPFKCDLCRKEFKRKSNLTSHMVSHSGVKRFKCKICDKAFSHRSNMNKHLLIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283856;
- 90% Identity
- iTF_00283856;
- 80% Identity
- iTF_00283856;