Ccar013392.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:254504375-254506189[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-07 0.00011 23.6 0.0 5 44 1 39 1 40 0.91
Sequence Information
- Coding Sequence
- ATGTCTCGAGCTATAGAAGAATGCAAGGATGGAGCTTCAATCAAATCAGTGTCGGTAAAGTATGGAATTCCTTTTTCTACCTTATATCGACACGTGAAATCTGGAAGCTCTGTAAAAAAACTGGGTAGATTTACGTGTATTTTTAATATAAGCCAAGAGAATGAATTGGCTTCGTACTTGAAAGAAATGGATTCCTTATTTTATGGACTCACCAGACACGACTTTAAGGTGTTAGCTTTTGAGTACGCCAGTAGAAATAACATCACATGCCCTGACAGTTGGCGTGTCTGTGGTAAAGCTGGTGATGAATGGTTTGCTTTATTCCAAAAAAGGCATAAAGAGATTGTACTGCGGCTTCCTGAGTGCACATCAGTGGCAAGAACCAGGGGgtttaataaaaatgaagttCAGCATTTTTTCAATTTGCTTACTaaagaaattgataaaaataagatTGATTCGACAAGAATTTACAACATGGACGAAACTGGCGTCTCAACAACTTCCAAGAAAGCCCCGAAAGTTCTTTCCGTTTGTGGAAAGAGGCAAGTTGGAGTGATTTCTAGCTCTGAACGTGGTCAGCTAACAACAATTATATGTTGTTGTAATGCAGCTGGAGCTTTTGTTCCACCGTTCATGATATTTGCTCGTAAAAGAATGCAGGAGAGGTTACTTGATGGAGCTCCACCAGGTACCCAAGCAACATGCACTCCAAGTGGGTGGAGTAACGGTGAATGTTTCTTTTCATGGTTGCAATTCTTTGTAGAAAATGTACGGCCGACAAAAGACAAAAAAGTTATATTGTTATTAGATGGTCATGAATCCCACAAGAATTACTATGCCCTGGAATATGCATCAAAGAATAACGTTGTTATAATTACAATTCCACCGCACTGCTCACATAAGATGCAACCGCTTGATGTAGGGGTTTATGggccagtaaaaatattttttgaacaagaaGTTTCTTTGTTTCAAAAACAGCATGTTGGTCGTATCATTAATCAATATGACGTGGCCAGACTTTTTGGTGCAGCCTATATAAAGGGCGCTACTCTTCAAAACGCCATAAATAGTTTTAAGAGTTCTGGAATGTGGCCAACgaattgtaatatttttggaGATGATGATTTTGCCCCATCCTTAATAGGCTTGCTTGCATTATCTTCTGGTAATGATGAAGATCGTCCACAGATAGTAAGCATTGATGTTAACCAATCTAGTTCTTCTACAAGTGAAGTTGTTGACATGACCAATGTAGAATGTAGTGCAACAGCAGATGCAGCTGTTCCTAGCACATCAAAGTcaagtaggcctacatcaaagGTAGGCGCAGGTCCTCATTTAGCAGAGAACGACATGCTGTCGTCAACAGATGATGAAGCCACCAATGTCTCTCCTAGAAATTACAGCCCATTTGAAATAAGACCACTTCcaaaattatacaaaagaaaaactaaccGTCATTGCAAGCGTCAGTCCGCGGAAATATTAACGAGCACTCCGGTGAAAGATGCGCAAAAAATTAAAGCAATGAAACTTGAAGCCAAGAAATCTCAGATTAACAACGATAAACCAACTAAGCCTAGGAGGCCTAAAGTAAAACGAAATatattcaaaaacaaacaaaaagactCTTATCAATATCAAAAAGATTGTGTTTGTCCAATGTGTGGTGATATTTATACGGAACTGAACGGGAAACCAGTGGAAAATTGGATTCAGTGTAGCCTGTGTGAAATATGGTATCATGAAGCATGCACCTCATACGAAGGAACGTCTGATTATACTTGTGACAATTGCATTGAGACATAG
- Protein Sequence
- MSRAIEECKDGASIKSVSVKYGIPFSTLYRHVKSGSSVKKLGRFTCIFNISQENELASYLKEMDSLFYGLTRHDFKVLAFEYASRNNITCPDSWRVCGKAGDEWFALFQKRHKEIVLRLPECTSVARTRGFNKNEVQHFFNLLTKEIDKNKIDSTRIYNMDETGVSTTSKKAPKVLSVCGKRQVGVISSSERGQLTTIICCCNAAGAFVPPFMIFARKRMQERLLDGAPPGTQATCTPSGWSNGECFFSWLQFFVENVRPTKDKKVILLLDGHESHKNYYALEYASKNNVVIITIPPHCSHKMQPLDVGVYGPVKIFFEQEVSLFQKQHVGRIINQYDVARLFGAAYIKGATLQNAINSFKSSGMWPTNCNIFGDDDFAPSLIGLLALSSGNDEDRPQIVSIDVNQSSSSTSEVVDMTNVECSATADAAVPSTSKSSRPTSKVGAGPHLAENDMLSSTDDEATNVSPRNYSPFEIRPLPKLYKRKTNRHCKRQSAEILTSTPVKDAQKIKAMKLEAKKSQINNDKPTKPRRPKVKRNIFKNKQKDSYQYQKDCVCPMCGDIYTELNGKPVENWIQCSLCEIWYHEACTSYEGTSDYTCDNCIET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283342;
- 90% Identity
- iTF_00283344;
- 80% Identity
- iTF_00283345;