Ccar033618.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000005.1:6833013-6834830[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-07 0.00016 23.1 0.0 2 39 9 47 8 50 0.90
Sequence Information
- Coding Sequence
- ATGGCGCCCAGGAAAACATGGGATAAGGAATCAATGATCCAGGCTATAAATTCTGTGAAAACAAAGAAAATGGGATATAAGGCTGCAAGCAAAACATTTAATGTTCCTCGAGCTACACTTAAGGACTACATAAAAAAAGGAGGAGATTTGACTGCTGAGGagttagtaaacaaaaaaattggaaGAAAGCCGGTTTTGCCACCAAATATAGAAAACGAACTAGTATTCTACTGTGCGGAAATGGAAAACAATTTCTATGGTTTAACGGTGAAAGATTTGCGTCGAATGGCGTACCAGCTTGCAATACGAAATAATGTTGAACATCCGTTTTCTAAGGATAAAAAAGCAGCTGGGCGTAAATGGATGCGCCTTTTTTTTAAAAGACATCCTCATTTATCATTAAGAAAGCCTCAGTTATTGTCTTTAGCCAGAATCCAAGGCTTCAGTGAGGACAGTGTTAAAAAATTCTTCAGTATTTTAAAACCAGAATTAGACAGAGTAAATTATAATCCGTTGAAAGTTTTCAACGTTGATGAGACGGGCATTTCAGTAGTCCAACACAAAACTCAAAAAATTGTGGCTACAAAAGGAAAGAGAGAAGTACATAAAATGTCTTCGGCGGAAAGAGGGTCGTTGGTCACAGTTGTTACATGCATGTCCGCTGCTGGACAATATGTGCCACCAATGATGATCTTCCCTCGTAAACTGATGAAAGCAGAACTATTGGATGGTGCTCCCCCCGGTACCATTGGAGCCGTCCACGAAAGTGGATGGATTACCGCAGAGCTCTTTGAAAAATGGTTTCACCATTTTGTATTTACTGTGAAACCATCAAAAGAAGATCCAATCGTTCTTGTGTTAGATGGACATTATTCACACACGCGGAATATCAATGTTATCGGGTATGCTCGTGAAAATGGCGTTTCAATTATTTGTTTACCTCCACACTCCACTGCTAAAATGCAACCATTAGACGTTGCTTTTATGTTCCCTTTGAAAACGTACTATGCCCAAGCTATTGAGAACTGGTTGAGTAGTAATCCTGGACGTGTTGTAACTAATTTACAGCTAGCCAAATTGTTTAATGAAGGGTATGTAAAAGCCGCGACTATGGAAACGGCTGTCAACGGTTTTCGTAAAACTGGTATAATTCCTTACAACCCTAACATATTCAGTGAAGTGGATTTTGTGGCACACATTCAATCAAACTCTGTAAATGTGACCCCTGCAACACAAACGGATTCTAATCCTTCTACAAGCACTGCTTCTACTTCTACGGTTAGCCCGCAACAAATCAAGGCGGTGCCAGTCATCCAGGCTTCAACATCTGCTAGGAGAGGATCTGCTATTCTTGTGACAAGCTCtctacataaaacaaaaattgaagagGCCTTTGCCAAGAAAAATGCTCCTGCTCGTAAGAGACTTTCATCGTCATTGCCTAAGACCCCTGCAACACAAAGTAATAATCCTTCAACAAGCTCTTCATCTGCTTCTACGGTAAGCCCGAAACAAATCACGGCCCATAAGAGACTTGAGTCGTCATtgtctaaaaaaattaaacgaactGGACCCAAGAAGAAAACTGAATCATCAAGTGAAAGTGAATGCAGTGATGCCATTGATTACGTCTCCACCGACAATGAGGACAGTGATAACGATGACGCTCAGTGCCCTGTCTGCGGAAAGAATTATTCGTCAGACAAATCTGGTGAAAAATGGATTtgttgcataaaatgttttcagtGGCACCACGAAAACTGTAATCAAACTAAAGaccgaataaaatttatttgtgataTTTGTTTGGATGgctaa
- Protein Sequence
- MAPRKTWDKESMIQAINSVKTKKMGYKAASKTFNVPRATLKDYIKKGGDLTAEELVNKKIGRKPVLPPNIENELVFYCAEMENNFYGLTVKDLRRMAYQLAIRNNVEHPFSKDKKAAGRKWMRLFFKRHPHLSLRKPQLLSLARIQGFSEDSVKKFFSILKPELDRVNYNPLKVFNVDETGISVVQHKTQKIVATKGKREVHKMSSAERGSLVTVVTCMSAAGQYVPPMMIFPRKLMKAELLDGAPPGTIGAVHESGWITAELFEKWFHHFVFTVKPSKEDPIVLVLDGHYSHTRNINVIGYARENGVSIICLPPHSTAKMQPLDVAFMFPLKTYYAQAIENWLSSNPGRVVTNLQLAKLFNEGYVKAATMETAVNGFRKTGIIPYNPNIFSEVDFVAHIQSNSVNVTPATQTDSNPSTSTASTSTVSPQQIKAVPVIQASTSARRGSAILVTSSLHKTKIEEAFAKKNAPARKRLSSSLPKTPATQSNNPSTSSSSASTVSPKQITAHKRLESSLSKKIKRTGPKKKTESSSESECSDAIDYVSTDNEDSDNDDAQCPVCGKNYSSDKSGEKWICCIKCFQWHHENCNQTKDRIKFICDICLDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283471;
- 90% Identity
- iTF_00283471;
- 80% Identity
- -