Ccar034565.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
XYLB
Assembly
GCA_035578175.1
Location
JAQMRL010000005.1:35180261-35208113[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.4e-08 1.4e-05 26.4 0.0 3 37 16 50 15 54 0.92

Sequence Information

Coding Sequence
ATGCCACGCAGTAAAGCAGGGGTGAAAAGAAAGGTTGTTCCAAAAGAAGATATTCAAAAAGCCATTGACATGGCTTTAAAAGGAGAAATGACGGTGTACAAAGCAGCAAAAGATTTTGGACTGTCCAAGACAACTTTGCTCCGACAACTGAAATCCTTCAAAGCGTCAGaaaaagcAGCCCAGTTACACTATGGTTTAACTTTAAGAGATGTTAGAACATTAGCTTATCAGTTtgcaaaactaaataataaaaattatgattccTCATGGGATATAAATAAACAAGCTGGTAAAGACTGGCTCATTGGTTTTCGTAAAAGATTTGGAAATCAGCTAGCTTTACGTAAACCGGAAGCCACGAGCTTGGCTCGCTCAACATCGTTTAGCAAAGCTAATCACTTCATCAAACATAGTTGTGCAAGCAAAGATAATCCTGTAATTCTTCTCATGGACAATCATGAGAGCCACATTTCTGTGGCAACTATTCAGCTAGCCAAGGACAATGGTGTAACACTGGTGACATTTCACCCACACACCAGCCACAAGATGCAACCCCTTGACAGAGGGGTTTTTGGACCTTTCAAGGCATACTATAACAACTCCATGAACAATTGGATGAATACTCCAGGGAATATCGGGAAACCGGCCACTATTTATGACGTTGCAGAATTAGTAGGGCGGGCCTTCCCTCTTGCCTTCACACCATCAAATATTGCCACTGGATTTAGAGTGTCAGGATTGCATCCCCTGAATGAGGACATATTTCCTGAAAGTGAATTTTTGCCAGCATATGTCACTGATAGGCCTGTAATGGATGAACAGGATGTAGCTAATGTTCCAAATGTCAGAGATCTACCGATAACGGGTACATCAACTTCAACTGCTTCTACTGACTTACCCATTAGTAGTCCATCCACTTCAAGAGCTTTTAGTAGGCATACTACACCATCTACATCTAAAACTCAAAATATAGGCCAACCTATTGTTTCTCCAGAGGAAATTAGGCCTTATCCAAAGGCAGGGCCACGAAAGCAAACCCGAGGaggaaaaccaaaattaaaatcgTGTATTTTAACTGATACACCTGAGAAAAATCGCATAGAGCTGGTAAAAGCAAATAAAGctttgagaaaaacacaaaaaagtagatctgtaaaagaaattaaacaaaaaacaaaagttaGAAAAGCCCTTTTATACAATTCTAGTTCTGACACAGACACGGAGGATGTTGATTTATGTGAAGAATCAGGATTATCAGATGAAGATTTTGCTGACCTTGAGGACCTGGACAATACTAATATAGAACCTGGGAGTTTTGTTTTGGTGAAGTTTTGTgggaaaaaaaccataaaatattttgCTGCTGAAGTGGTTGCTAAAAATTATGACATTTACGAAGTGAAATATTTGAAGAAGGATTTGGACTGTCAGAAGTTTACTCGTGAAGACCCTGTAAGAACTCATAGTGGCGTAGTTAGAGTTGACAAAAAGACAGTGACTGCCCCTGTTCTTATGTGGGTTAAAGCATTAGATcttttattagataaattaaGAGTATGTGGTGCAGATTTCTCTAAAGTTGCAGCACTCTCTGGGACTGCTCAGCAACATGGAACAGTGTATTGGCAGGCAGGTGCAGAGAAAATTCTTCAGTCACTGGATCCTTCAAATTTTCTCCATACACAGTTAGCATCTTGTTTTTCGATTACAAATTCTCCAATATGGATGGATTCCAGTACGACTAAACAATGTCAAAAATTAGAAGCTGCTGTTGGTGGACCTATTaaattggCTGAAATAACTGGTTCTAAAGCTTATGAACGCTTCTCCGGTtcacaaattgcaaaaattgcggAAACTAAGCCTGCTGTGTATAGCAATACTGAGAGAATCTCATTAGTAAGTAGTTTTGCTTGTTCTCTATTCCTTGGATCTTATGCACCAATTGACTGGTCAGATGGATCTGGCATGAATTTATTTGATATTCACAAGAAAGAATGGTTTCAAGCTTGCCTGCAAgcaTGTGGTCCAGATTTAGAATCAAAATTAGGAGAACCTGTACCATCATATGCAGATCTTGGTCCTATTAATGAATATTATGTTGAAAGATTTGGGTTTAATCCTCAGTGTCGTGTTATCTCATTTACTGGAGATAATAATGCTTCTCTTGCAGGTATGAGATTGGGTGCTAATGACGTTGCTGTTAGTTTAGGTACAAGTGacacaatatttttatcattatctgAACCTAAAACTTTACCAGAAGGTCATATACTTGTTAATCCAATTGATTCAAATGCTTATATGGCTTTACTATGTTTCAAAAATGgttcattaacaagagaacgaaTTAGAGATTTGTTCTGTGGTGGTTCATGGGATGAATTCGATCGTTTATTAGATAGCACACCTCGTGGAAATTTTGGCAATTTTGGCTTGTATTTTGATGCTGATGAAATTATACCATTTGTTCACGGTGACTTTAGATTTGATAAAGCAGGTAATCCAGTTTCAAAATTTACATCACCAGAACTTGAAGTTCGAGCTTTAATTGAAGGACAATTTTTAGCGAAACGTGCTCATGCAGAAGATTTAGGTTTTTCAATcgGGTCTGGTACTCGGATTATTGCTACTGGAGGTGCTTCGAACAATAAAGCCGTCCTTCAGGTTCTAGCAGATTGTTTTAATTCACCAGTATATACTTTGgaagCAGCCAATTCTGCGATGTTAGGTTCCGCATATCAAGCTAAGCATGGAAGATTAAAAGCTAATGGAGATGGAAACGTAGATTTCATGTCCATAACATCTACAGCTCCAGAGCCCGTTCTTGCATGCAAGCCTTTCAAGGATGCTGCTGAGGTCTGtatgttgaaataa
Protein Sequence
MPRSKAGVKRKVVPKEDIQKAIDMALKGEMTVYKAAKDFGLSKTTLLRQLKSFKASEKAAQLHYGLTLRDVRTLAYQFAKLNNKNYDSSWDINKQAGKDWLIGFRKRFGNQLALRKPEATSLARSTSFSKANHFIKHSCASKDNPVILLMDNHESHISVATIQLAKDNGVTLVTFHPHTSHKMQPLDRGVFGPFKAYYNNSMNNWMNTPGNIGKPATIYDVAELVGRAFPLAFTPSNIATGFRVSGLHPLNEDIFPESEFLPAYVTDRPVMDEQDVANVPNVRDLPITGTSTSTASTDLPISSPSTSRAFSRHTTPSTSKTQNIGQPIVSPEEIRPYPKAGPRKQTRGGKPKLKSCILTDTPEKNRIELVKANKALRKTQKSRSVKEIKQKTKVRKALLYNSSSDTDTEDVDLCEESGLSDEDFADLEDLDNTNIEPGSFVLVKFCGKKTIKYFAAEVVAKNYDIYEVKYLKKDLDCQKFTREDPVRTHSGVVRVDKKTVTAPVLMWVKALDLLLDKLRVCGADFSKVAALSGTAQQHGTVYWQAGAEKILQSLDPSNFLHTQLASCFSITNSPIWMDSSTTKQCQKLEAAVGGPIKLAEITGSKAYERFSGSQIAKIAETKPAVYSNTERISLVSSFACSLFLGSYAPIDWSDGSGMNLFDIHKKEWFQACLQACGPDLESKLGEPVPSYADLGPINEYYVERFGFNPQCRVISFTGDNNASLAGMRLGANDVAVSLGTSDTIFLSLSEPKTLPEGHILVNPIDSNAYMALLCFKNGSLTRERIRDLFCGGSWDEFDRLLDSTPRGNFGNFGLYFDADEIIPFVHGDFRFDKAGNPVSKFTSPELEVRALIEGQFLAKRAHAEDLGFSIGSGTRIIATGGASNNKAVLQVLADCFNSPVYTLEAANSAMLGSAYQAKHGRLKANGDGNVDFMSITSTAPEPVLACKPFKDAAEVCMLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-