Ccar047281.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000010.1:12503578-12505515[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-09 1.2e-06 29.9 0.0 5 42 22 58 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCTCGAATATATCAGAGTGTGAGTACTAGTCGtagtaaatataattattcaCCCAACCTTCTCAATAACGCTATTGAGGAAATTAGGAATGGTCTTAGTTTTAGAAAATgttctacaaaatacaaaattcctACCACTGTATTACACAGACATTTTAAAAAAGGGGATCAAGTAAAGAAAAAAGGTGGGCAGACATCGCTGACTGAAAACGAAGAAGCTGTGTTGGTTGATAGACTTAAAATATGTAGTGAATGGGGGTACCCCATCGACTCATTGACATTAAGGTTGTTGGTGAAAGACTTTCTTGAGCGACAAGGAAGATGTAtacctaaatttaaaaacaatacaccTGGCCGTGATTTTGTATATTCATTTTTGAAACGTCATAAAGATATTTTGTCAACTCGAATGTGTCAGAACATCAAAAGGGCGCGGGCAGCAGTATCTTATGAAATTATAAATGGTTTCTTTGATGAGCTTGAAAAAGAGCTGAAGGATGTTCCTCCCAGTCACATAATAAATTATGATGAAACAAATCTGAGTGACGACCCAGGAAAACGTAAACTGATTTCCAGAAGGGGTTGTAAATACCCTGAAAGAGTTATAAACTCATCGAAGGCATCTACATCTGTGATGTTTGCTGGGACCGGAGAAGGCAAAATATTGCCGCCATATGTCGTCTACAAAGCACAGCACTTATACGACAGCTGGAGAGAAGGAGGCCCAAAAAATTCAAGATACAACAGGACTAAGTCTGGATGGTTTGACAGTTTCTGTTTTTGTGACTGGGTGGAGTCAATTGCTATTCCTTTTTTTAATAAGGTTGAAGGTGATAGACCAAAATTTTTGGTTGGGGATAATTTAGCCTCTCATCTTTCAGTAGATTTGATAAGATtatgccatcaaaaaaacatcaAATTCATATTCCTACCAGCCAATTCcacccactttactcaaccaCTTGACGTAGCATTTTTTAGACCAATGAAAATGGCATGGCGTCAGATACTGGAAGAATTGAAAAAAGGACCTGGAAGAGGTGAAGCAGCTGTACCCAAGGACAAGTTTCCAGCGCTACTAAAAAAGCTCTGGGAGACCCTCAAAGAAGATAATGTGCGGTCTGGGTTTAAAAAGTGTGGCATTGTGCCCTTATGTCGCACAAAAGTTCTTGAGATGTTGCCTAGAACTGATTGCTGTACCACCAGCCAGAATAAATGTCTGTCAGGAAACTCTACACCAACATCAGTAGGTGTAGAAGCAATAGACGAGACATTCAAAGAGCTGTTGCAATCCATGAGACAGTATGACACTCCCAAACCAAAGAGAAAGAGGACTAAAGTTGCTGTTACACCTGGAAAGAGTGTTGAAGTAAAGGACTTCGATGAAGATGAGACTCCGATAGATGTCCCTAAAGCAGGAAAGTCAGGGAATGCAACCTCAGATGCAAAACACGAGCAGATCTCTACACAAAGAAAAAGACTGTCCAAGAAGAAAACCAGGGTCATTATGGAATCATTGTCGTCAGATGACTCGGACTACACGGTTCAAGATAGTGATATTGATTTTGTGTTTTCTACTTCTGAAGATGAAGTCAATGTAATAAATCCTGAGAACCCTGAAACCAGTGCATATGATACTTGCTATCATCCAGGAGACTATGTGATAGTTAAGGTGTTTGGAAAAACAAAGCATTCTTGCAGACTGTATGTGTGCAAAATATCATATCCACAAGACAATGGCTATGTCggagtatttttaaaaaagaccCCTAAAACGTGGAAATTTTTTCAAACAGAGGAAGAGGCATTTTTTAACAACGAAGATATTGTCAAAAAACTGCAACCTAAAGATAATACTGGTACCAACACTTCATCTCGTTTTAAAGACATGGTTAGCTTTAAGAATGATTTAAGTGATTTATTATTGTACTATTAA
- Protein Sequence
- MPRIYQSVSTSRSKYNYSPNLLNNAIEEIRNGLSFRKCSTKYKIPTTVLHRHFKKGDQVKKKGGQTSLTENEEAVLVDRLKICSEWGYPIDSLTLRLLVKDFLERQGRCIPKFKNNTPGRDFVYSFLKRHKDILSTRMCQNIKRARAAVSYEIINGFFDELEKELKDVPPSHIINYDETNLSDDPGKRKLISRRGCKYPERVINSSKASTSVMFAGTGEGKILPPYVVYKAQHLYDSWREGGPKNSRYNRTKSGWFDSFCFCDWVESIAIPFFNKVEGDRPKFLVGDNLASHLSVDLIRLCHQKNIKFIFLPANSTHFTQPLDVAFFRPMKMAWRQILEELKKGPGRGEAAVPKDKFPALLKKLWETLKEDNVRSGFKKCGIVPLCRTKVLEMLPRTDCCTTSQNKCLSGNSTPTSVGVEAIDETFKELLQSMRQYDTPKPKRKRTKVAVTPGKSVEVKDFDEDETPIDVPKAGKSGNATSDAKHEQISTQRKRLSKKKTRVIMESLSSDDSDYTVQDSDIDFVFSTSEDEVNVINPENPETSAYDTCYHPGDYVIVKVFGKTKHSCRLYVCKISYPQDNGYVGVFLKKTPKTWKFFQTEEEAFFNNEDIVKKLQPKDNTGTNTSSRFKDMVSFKNDLSDLLLYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283356; iTF_00283389; iTF_00283359;
- 90% Identity
- iTF_00283356; iTF_00283389; iTF_00283359;
- 80% Identity
- -