Ccar009795.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:160321167-160323194[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 6.2e-07 30.8 0.0 3 40 17 54 15 57 0.91
Sequence Information
- Coding Sequence
- atgGTTCGAGACTATAAAAGAAAAACGGATAGACAATCATGGTCCTACGAGTCTATGAATAACGCAGTTGATGCAGTTATTTCCGGCCAATTCGGTTACAAAAAGTCGTCTCAACAGTTCAATGTGCCCCAATCAACTTTGgaaagatatgtaaaaaaaaagaaagaaaaccctgactataaaattaataaatcagcaggaaaatttcaaaaagtatttAGTGATGAGCAGGAACAAGAGCTAGTAACCTACTTAAAATCTATGGAGGCTAGGTTATTTGGTTTGTCAATGAAAGACTTGCGGGAATTAGCTTATCAATTAGCTGTAAGGAATGGCATTGGCCATAGATTTAATAATCAAACCGCAGGACAAGATTGGGTCTCAGGCTTCCTTAAGAGACATCCTACTTTAACTCTTCGGACACCTGAGTCAACATCTGGTGCACGAGCTATGGGGTTTAACAAAGTGTCTgttgacaaattttttttgttactcacAAAAGTAGTGGACAAGCACAAACTAACTGCCTCCCAAATATATAACTGCGACGAAACTGGAATTACAGTTAACCCAAAGAGCAATTCAAAAATCATTGCCCTAAAAGGAAAGCGTCAGGTTGGGTTGTTAACTTCGGCAGACAGAGGAGAAACTGTAACTGCCCTCCTTTGCATGTCAGCAAGTGGAGCGTACATGCCTCCTATGCTGATATTTCCTAGGAAAAGAATGCAGCAGGAGTTTGAGATGGGATTGCCTCCTGGGGGTTGGGCAGAGGTACACAGCTCGGGGTGGATTACATTAGATACTTTTTTTGCATGGTTCAAGAAGTTTGTTACATTCTCTAATGCATCTAAAATATCGCCTGTTCTTCTTATCCTTGACGGACACTCGACACACACTAAAAACCTGAACGTTATTGACTATGCTAGGGACAATGGAGTTTCCATGCTATGTATTCCACCGCATTGCTCCCAGAGGCTTCAGCCTCTTGATGTTGCATTTATGAACCCCTTAAGTCGATACTACAGCGAGGAGCTCCGAAAATGGCTTCGGAGCAATCCAGGAAAAGTGGTAACTTTATTCCAGATATCGACTATTTTTGGGGCAGCCTATATTCAATGCGCCAATATGAGAACTGCCATAAAGGAAGATTTTCTCCCAGCAGACGTAACCGACATTCCTGTTGAAATACCTCCTTCCCAAGAGGCTGTCTTATCACCAGGAGAAGAACTGATCCAAGGAGGCGAAGAACTTATCCAAGGAGGTGAAGATCTTAACCAAGGAGGTGAAGATCTTAACCAAGGAGGTGAAGAACTTATCCAAGAGCCTTCTCCGAACATTCCAGTTAAAAAATGCCAATCAGCAAGCTCAAATGATGTTGATGAAGTTTTTTGCACTGATAAGGAGCAAACACCGGCAAAGAAACCCCGGCTCAATGATGGATTGAGTGTCCCTGGATGCTCTCATTGGGTAGATGGTAACCAGGCCTCTCAATTAGGGGAAACATCCAAATTTGTAGTCTCACCCGAAGTTGTGATGCCAATTCCCAAAGTTAAGGCCACCACAAAGAGGTCAAATCGGAAAAAAGGGAAGACTGCGATCTTAACAGAATCGCCATACAAAAGAGAACTTATGGAGGCTATAAATGAAAGGGAAGAAAAAAATCGTATCAAGCAAGAAAAAGCAAGAATGAGGTTGTTTAAGAAGGAGAACAAATCGAAGAGTAaggaaactaaagaaaaaaacctGAAGAAACTTGAAAAAAAGAAGGAGCAGAAAAATAAAGACAATGATGacagtgatgatgatgatgatgcagaCTGTGCCTGTTTGTATTGTGGAGAGTTCTATTCAAAATCAGTAGAAGGGTGGGTATCGTGCTGTAGGTGCAAAAAGTGGGCTCACAATTCATGCGCAGGCATAGACAGTGAGGACGATGAAGCTGTATTGTTATGTGAATTATGTGACGATGAGGACTGA
- Protein Sequence
- MVRDYKRKTDRQSWSYESMNNAVDAVISGQFGYKKSSQQFNVPQSTLERYVKKKKENPDYKINKSAGKFQKVFSDEQEQELVTYLKSMEARLFGLSMKDLRELAYQLAVRNGIGHRFNNQTAGQDWVSGFLKRHPTLTLRTPESTSGARAMGFNKVSVDKFFLLLTKVVDKHKLTASQIYNCDETGITVNPKSNSKIIALKGKRQVGLLTSADRGETVTALLCMSASGAYMPPMLIFPRKRMQQEFEMGLPPGGWAEVHSSGWITLDTFFAWFKKFVTFSNASKISPVLLILDGHSTHTKNLNVIDYARDNGVSMLCIPPHCSQRLQPLDVAFMNPLSRYYSEELRKWLRSNPGKVVTLFQISTIFGAAYIQCANMRTAIKEDFLPADVTDIPVEIPPSQEAVLSPGEELIQGGEELIQGGEDLNQGGEDLNQGGEELIQEPSPNIPVKKCQSASSNDVDEVFCTDKEQTPAKKPRLNDGLSVPGCSHWVDGNQASQLGETSKFVVSPEVVMPIPKVKATTKRSNRKKGKTAILTESPYKRELMEAINEREEKNRIKQEKARMRLFKKENKSKSKETKEKNLKKLEKKKEQKNKDNDDSDDDDDADCACLYCGEFYSKSVEGWVSCCRCKKWAHNSCAGIDSEDDEAVLLCELCDDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105694; iTF_01372513; iTF_01372514; iTF_00283331; iTF_00283332; iTF_00283333; iTF_00283334; iTF_00283335; iTF_01372423; iTF_00283336; iTF_01105640; iTF_00283337; iTF_01372425; iTF_00283338; iTF_00283339; iTF_01372427; iTF_00283340; iTF_01372428; iTF_01372429; iTF_01372503; iTF_01372512;
- 90% Identity
- iTF_00283331;
- 80% Identity
- -