Ccar009817.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:160398261-160406794[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 5.1e-07 31.1 0.0 4 38 272 307 269 311 0.90
Sequence Information
- Coding Sequence
- ATGCATTggcaaaaaaaatcaaaaggaAACGCTAAGGCTAAATCAACGAAAAAGCGCCCAAAGAAAATGTTAGACTTCAGTTCTACTTCTGAGGAAGATAGCCATATTAAATTTATGGATACAGATGACAGTGAGGGAATTTTCGAAAATGAAAATGAGTGTGTGGAATGTCAAGAATTGTATCAGCAAACGCAGTCTAAATCAGACCGGATTCAATGTGTGAACTGCACAAGATGGCTTCACGAGACATGCTcaatttataaattcaaatgtACTGACTGCGGTCGTGTAGAAAGAAGACAGCAAGTTCAAAAAGAGagagAGCTCCTTGTTCATAAAAGGAGagcaaaaaagttttttaaatcgATTGAAAAGGTCAGAGAGGAATGTTTATCTGACAACAAAATAGCTGGAATCTGTATGGACTTTATGCAGAATCTTCAGCTACCCAAAATACCAGGCCAAGAGGTCTTCTATTTGCGACAGTTGACTGTTAATGTTTTTAACATTCATGATATTAAAAGCAATAAAGCCAAATTCTATGTGTATCATGAGGGCTTGGCTAAGAAATGGCCAAATGAAATTTGCTCATTTTTAGAAGATTATATTAATGAAGTTCTTGATTCAAATGTTAGACATCTTCATGTTTTTTCTGATGGTGCAGCCGGACAAAATAAGAACAATGTAGTTGTAAGGCTGTTTCTTACCCTAATAGAAATTGGACGTTTCGACAGCATTCATCACTGCTTTCCGGTGAGAGaaatGCCgaggaagaaaaataaaaattccatcTACCAGAAGTGGTCTAACATAGACATGGAGAAAGCACTGCAATCCCATATCAATGGATATCTCTCCATCAGAGGAGCAGCAGAACACTTCAGAGTTCCTTACACTACGCTACAGAATCGAGTGAAGAGGTTTCAGTACCGGCAGGCAGGCTGTGAACCTCCAGCAGGAGACAAAAGCATTGGACATCCAACAGTCCTGACAAATGAGCAGGAATCAATACTTGTAAGTAGACTTTTGTACTTAGACAGCCGAGGATTAGGGTTAACACCTCTTAAGCTAAGAAAAACGGCATATGAATTtgctgtgatgaatgaaataaaGCATCCGTGGGGAGATTGTGGAGCTGCTAAAGTTGACTGGTTTCGGGCTTTTCTCCGACGCCATCCAGAGCTGAGACTGAGAAAACCCGAGAACTTAAGCAGAGCCAGAGCAAACGGCTTAAATAAAACTGaggtagaaaattatttttcagttctCAAAAACGTTTTAACAGAATTTAATCTGTTTAACAAGCCAGAGAGAATTTATAACGTTGATGAAACTGGGTTTCCACTAAACAATCGACCATCTAAAGTAATCAGTAGGAGGGGAAAAAAGGAAGTAGTTGCTCTAACCAGTAAAGAACGAGGAGAAAACATCACAGTTGTATGTTGTTTCAATGCAGCGAGTAGTTATATTCCTCCCATGGTTATAATGAAGGGTAAAAAACAGATCACAGAATTTAAAGACCACCTATCCAGAGGTTCATAA
- Protein Sequence
- MHWQKKSKGNAKAKSTKKRPKKMLDFSSTSEEDSHIKFMDTDDSEGIFENENECVECQELYQQTQSKSDRIQCVNCTRWLHETCSIYKFKCTDCGRVERRQQVQKERELLVHKRRAKKFFKSIEKVREECLSDNKIAGICMDFMQNLQLPKIPGQEVFYLRQLTVNVFNIHDIKSNKAKFYVYHEGLAKKWPNEICSFLEDYINEVLDSNVRHLHVFSDGAAGQNKNNVVVRLFLTLIEIGRFDSIHHCFPVREMPRKKNKNSIYQKWSNIDMEKALQSHINGYLSIRGAAEHFRVPYTTLQNRVKRFQYRQAGCEPPAGDKSIGHPTVLTNEQESILVSRLLYLDSRGLGLTPLKLRKTAYEFAVMNEIKHPWGDCGAAKVDWFRAFLRRHPELRLRKPENLSRARANGLNKTEVENYFSVLKNVLTEFNLFNKPERIYNVDETGFPLNNRPSKVISRRGKKEVVALTSKERGENITVVCCFNAASSYIPPMVIMKGKKQITEFKDHLSRGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -