Ccar043537.2
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- cheC
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000008.1:78617204-78619005[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-11 8.6e-09 36.8 0.0 2 38 14 49 13 53 0.90
Sequence Information
- Coding Sequence
- atgggaaaatatataaagaaaaaggaaacaaaatacaaagaaaagGATATGGAGGATGCTCTGGAAGCTGTTAGGGGGTTTATGACAATTAAGCAAGCAGCAAGACAATTCAATGTACCATATACCACTCTACAACGCAGGGTTAAAATCATTATGAACCCATGTGCTGGCGTAAAACTGAAAAAAGTCGGAGGACAACCAATTTTCACGGAGGAGCAAGAGCAAGATCTGGTCAATAGAATAATTAAACTGTCAAAATTTGGATTTGGATTAAATTCAAAGGAAATAAGGGCTGCAGTGTATAGGTATGTGTTAGATAACAACATACCAAATCATTTTAGCACAGAAGATCAAATGGCTGGACGCGACTTTCTTAAATCGTTTTTGTCCAGGCATTCTAACCTTTCCTATAGAAAGCCTCAAGGACTTTCACATGCTCGGAGTGAAGGCCTTAGTAAGGAAGAAGTCAGCGATTACTTCGAAAAATTGAAAGGACTCCTCATTTCAACTGCACTTATGAACAAGCCAGAAGCTATTTATAACGCCGATGATACAGGCTTTCCTCTGAATAATAGACCTCAAGAAAAAATACTTGCAGAGAGAGGTTCCAAACATGTAGTTTTACAAACCTGCGTGGAAAGGGGACAGAACGTTACGgcACGGTCAAAAGCAGCGACGCCTTGTAATGCAGAAAATGGATTTTCTTCTTGTGGAATATTTCCCTTTAATCCTGATATTCTTTCTGATAATGATTACTTACCTAATCTACGAGCACTTCACAATTCAACCAGCACAACTTCTACTAATCCAATTGAATCTACTCCATCCAGCAATACAATAAAAGATCAAAACCATCCTCAACTTTTAAAGATATTCTGCCAACACCAAAAAAAACCCGCCGAAAATTCTAAAAGATCTGGGAGACCAAAACAGAAAGCATGTGTTCTTACATCAGAATTACACATAAAGGAACTGAAAGAAAAGGAAAGGTCAAGAAAGGTATCGGTCCAGTCTGGAACAGTAAAACGAAAGCTAGAACTTAACCAGAGTGTAGACGCTGAGCAGTATGACCCAGGAGAAGGAACAAGCAGgcaaagtaaaacaaataaagcGAAAACCTCAGATACCGGCACCTCCTCGGAAACTGATGATAACACTTGTCAGTTTTGTTTCCTGCACTGGACTGATCCACGATCGGAAAAAAGGGCGACTGGATTAGATGCCAAGGATCCGCAAAAGAATGATATCATGAACAATGTttaa
- Protein Sequence
- MGKYIKKKETKYKEKDMEDALEAVRGFMTIKQAARQFNVPYTTLQRRVKIIMNPCAGVKLKKVGGQPIFTEEQEQDLVNRIIKLSKFGFGLNSKEIRAAVYRYVLDNNIPNHFSTEDQMAGRDFLKSFLSRHSNLSYRKPQGLSHARSEGLSKEEVSDYFEKLKGLLISTALMNKPEAIYNADDTGFPLNNRPQEKILAERGSKHVVLQTCVERGQNVTARSKAATPCNAENGFSSCGIFPFNPDILSDNDYLPNLRALHNSTSTTSTNPIESTPSSNTIKDQNHPQLLKIFCQHQKKPAENSKRSGRPKQKACVLTSELHIKELKEKERSRKVSVQSGTVKRKLELNQSVDAEQYDPGEGTSRQSKTNKAKTSDTGTSSETDDNTCQFCFLHWTDPRSEKRATGLDAKDPQKNDIMNNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -