Ccar003280.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:62365766-62367361[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-11 3.8e-09 37.9 0.0 1 44 15 57 15 58 0.94
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTACAAACGAACGACTAACAGGGGGAGCTGGACGGAGGAAACCCTAAAAGAAGCATTGAAAGCAATAGAAAATGGAACATCCATAAATGCAGCTAGCAAGCTATTTAAAATACCATTTAGCACacttcaagaaagaaaacaaaagtcTAAGCAGACTAAACCTTTGTTGGGGTGCAATAGCACCTTCTCGTTGGATCAAGAGGCAGCTCTAGCTACGAGACTaaaattattatctaatataTTCTATGGCTTGTCAGCTCATGAAGTACGTCGAGTGGCGTACGAGTTtgcagagaaaaataaaatacctcACAGATTTTCTCAAAGTGAGCGTTTGGCAGGCCGAGACTGGTTGTATGGCTTCCTGAATCGAAATCCTTCAGTGGCTCCACGAAAACCTGAAGCGACTAGCATCAACAGAGCTACTGCGTTTAGCCgcgaaaatgttaaattattttttgataatttagaacaagtttttgaaaaaactcATTACTCAGCAGACCGTATATACAATGCTGACGAAACTGGAATCACCACCGTTCAAGAACCTGGTACGATTTTAGCAACAAAAGGGAAAAAAAGGGTGGGATCCGTTACTAGTTGGGAGCGGGGTAAACTAGTTACAGTAATGAGTGCTTCTGGGAACTTTGTCCCCCCCATGTTTATTTATCCGCGTAAAAGGATGAGTCCACTGCTTAAAAAAGATGGACCAACATGTGCAATTTATGAGTGTTCTCCTAAGGGCTGGACAAACGAAGGACTATTTGCAACCTGGCTGAAACATTTTATTCACCATACGAAATCGAGTGTGGATAATCCCACCCTGTTAATACTAGACAATCACAACAGTCGTACAACTCTAGAAGCTTACGATTTATGTAAGGCCAGTGGAGTCACCATCGTGTCCTTACCGCCACACTGCTCACATCGACTTCAGCCTCTCGATGTTACATTTTATTCGCCACTTAAGGGGGCGTTTAAGGCAGAGTGTGATCGATACATGAAGTCAGAGAGACTGGTAAGAATTACCCCGTATGAATTAGTAGGTCTTTTCAACCAAGCATATTCAAGAGTGGCAACTGTTGGAGTTGCTGTGTCAGGTTTTAAGGCCACCGGAATTCATCCTTTTAATCCAAACATTTTCTCCGATGTTGACTACTGCGCTGCAGATGCACTTTTAGATGGACCAAACGTGTCTCTTCCTATTATAGTAAATGACGAGGTGGAAGTAGAAACTCAGGGGACAACTTTAGTGACACCAACTAACGCAGAGCAACAATCCTCGCCGCCGCCGGTCACAGACCAAGTTCCTGCTGTCACATTTGAGGATCTAATACCTCTTCCTTCAACATCCTCTGCTCCTGCAAAATTCAGATCAAGGGAAAAGCAAAAATCATCAATTTTGACGGCAACGCCTCAAAAGAAACAGCTAGAAATTGCagcagaaaaaagaaaatataaggaATTGAAAAAAGAAAACGCAGAACTAAAAAAACGTACCAAAGAGCTTTTCCGTCAGTTGGAGTTACCAATGCCTATAAAGTCCATTAAGAAAGAGAGGGGAGTCCAAAAAAGAACTTAA
- Protein Sequence
- MPRNYKRTTNRGSWTEETLKEALKAIENGTSINAASKLFKIPFSTLQERKQKSKQTKPLLGCNSTFSLDQEAALATRLKLLSNIFYGLSAHEVRRVAYEFAEKNKIPHRFSQSERLAGRDWLYGFLNRNPSVAPRKPEATSINRATAFSRENVKLFFDNLEQVFEKTHYSADRIYNADETGITTVQEPGTILATKGKKRVGSVTSWERGKLVTVMSASGNFVPPMFIYPRKRMSPLLKKDGPTCAIYECSPKGWTNEGLFATWLKHFIHHTKSSVDNPTLLILDNHNSRTTLEAYDLCKASGVTIVSLPPHCSHRLQPLDVTFYSPLKGAFKAECDRYMKSERLVRITPYELVGLFNQAYSRVATVGVAVSGFKATGIHPFNPNIFSDVDYCAADALLDGPNVSLPIIVNDEVEVETQGTTLVTPTNAEQQSSPPPVTDQVPAVTFEDLIPLPSTSSAPAKFRSREKQKSSILTATPQKKQLEIAAEKRKYKELKKENAELKKRTKELFRQLELPMPIKSIKKERGVQKRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283267; iTF_00283265; iTF_00283299; iTF_00283268; iTF_00283269; iTF_00283270; iTF_00283272; iTF_00139297; iTF_00139329; iTF_00139298; iTF_00139330; iTF_00139299; iTF_00139331; iTF_00139300; iTF_00139332; iTF_00139301; iTF_00139333; iTF_00139302; iTF_00139334; iTF_00139303; iTF_00139335; iTF_00139304; iTF_00139305; iTF_00139306; iTF_00139338; iTF_00139307; iTF_00139308; iTF_00139309; iTF_00139310; iTF_00139311; iTF_00139312; iTF_00139313; iTF_00139314; iTF_00139315; iTF_00139316; iTF_00139317; iTF_00139318; iTF_00139319; iTF_00139320; iTF_00139321; iTF_00139322; iTF_00139291; iTF_00139323; iTF_00139292; iTF_00139324; iTF_00139293; iTF_00139325; iTF_00139294; iTF_00139326; iTF_00139295; iTF_00139327; iTF_00139296; iTF_00139328;
- 90% Identity
- iTF_00283267; iTF_00283265; iTF_00283299; iTF_00283268; iTF_00283269; iTF_00283270; iTF_00283272;
- 80% Identity
- -