Ccar046933.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- clz9
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000010.1:3452450-3454204[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-12 1.4e-09 39.3 0.0 3 39 12 48 10 51 0.94
Sequence Information
- Coding Sequence
- aTGCCTTCTGAGAGAAGAAAGAAGTGGAATAAAGAGGCCATGATGCGAGCTGTAGAAGCAGTTCGAAATAAAACAATGGGGTACCTGAAGGCGTCGAAAGAGTTTGGTGTGCCAAAAGGAACATTAGAAAGGTATGTCAAAGATAAACGTTCCGGAAATGAGTTAGTTGAAGTTAGGTTGGGAAGAAAACCTGTTCTCAACAATAGTATAGAACAGGAGTTGGTCAAATATTGCATCGAAATGGAGCAAAAGTATTTCGGTCTTAGAGCTAAAGATTtaaaagtaatggcattccaatTAGCTATAAAGAATGGTATTGCACACCCCTTCAGCAGTGATAAAAGTGCTGCTGGAAAGAAATGGTTGAAAGGTTTCCTTAAAAGAAACCCACAGTTGTCCATGCGGACACCACAAGGCGTATCGTCTGCAAGAGTCAAGGGATTTAATCCAGaaaatgtcaaaatattttttgatatttttgagAAGCagttagaaaaaattaattactcgccACACCGACTTTATAACGTCGATGAAACTGGTGTAACTGTGGTTCAGCACAAACACAGCAAAGTGATCGGCTTAAAAGGGAAAAAACAAATTTGCGCTTTAACTTCTGCAGAAAGAGGAAAGCTGATAACAGTAGTGACTGCTATGAATGCTTCTGGCACGTTTGTGCCTCCATTATTTGTTTTCCCGCAGAAAAACATGTCATTACCATTAATGGAAGGCGCACCGTTTGGGTCAATTTGGGCATGTCATCCATCAGGTTGGATTCAAGCAGACATATTTACCAAATGGCTTGATCATTTTATTAGATTTACAAAGCCTACAGAACAAGAGCCTATACTACTGGTATTGGATGGGCATTATTCCCACACCCGGAATATAGACGTCATCGACATGGCACGCAAACATCATGTGGCAATTGTGTGCCTTCCTCCTCATTCGACCCATAGAATGCAGCCATTGGATGTGGGCTTTATGTCCCCTTTGAAAACTTATTACGCCCAGGAGATAGAAACATGGCTGAGGAACAATCCGGGTAGAGTTGTTTCAAAGAACATAGTGTGTAAATTATTCGGCGCTGCGTATAACAGGGCTGCGTCAATGGAGGTATCTGTCAATTCTTTTAGAAAAACTGGACTGTTTCCTTGTGATAGAAACATCTTCAGGGAACATGAATATGAAGAGGCTGCCAGGCCAGAAGCAGAACCAGCTGAAGCTTCAGTAGCAAACAGCAATCCTGCACAACCAGAATCACCGGTTACCCCTTGCAGCAGTTTTGTTACACCATATGCAATAAGTCCTATCCCCAGCACTAGCCGGCAACAACCAATGACTTCTTCCCGATCTGGTTCAGCAAATTTAATAACTGCTTCGccgtacaaaaataaattgactgaaaaacaagttttgaagaaaaataaatcaaCGTTAGCAAAAAAAGGGCtattcaaaaaaagaaaaattcaaacaaaggTTCACCAAAAATCTAGCAAAAAGAAGAAACCAATCCCTAGTGATTCAAGCAGCGATTCCGACGACGAAGTTATTTTGCAAGATTCAGATTCTGAATATGACGAATTTGAAGATGATTACGATGCCACGTGTACGCGTTGTTCTGGACGATACTCTGAAGACACCCGCGGGGAAAAATGGGCAAAATGTTCGAGGTGTTTTAAGTGGTCACATGAAGATTGTGGTGGAAGAAAGGGAAGTGATTTTTCTTGCCCATTCTGTGAGAAACCTTAA
- Protein Sequence
- MPSERRKKWNKEAMMRAVEAVRNKTMGYLKASKEFGVPKGTLERYVKDKRSGNELVEVRLGRKPVLNNSIEQELVKYCIEMEQKYFGLRAKDLKVMAFQLAIKNGIAHPFSSDKSAAGKKWLKGFLKRNPQLSMRTPQGVSSARVKGFNPENVKIFFDIFEKQLEKINYSPHRLYNVDETGVTVVQHKHSKVIGLKGKKQICALTSAERGKLITVVTAMNASGTFVPPLFVFPQKNMSLPLMEGAPFGSIWACHPSGWIQADIFTKWLDHFIRFTKPTEQEPILLVLDGHYSHTRNIDVIDMARKHHVAIVCLPPHSTHRMQPLDVGFMSPLKTYYAQEIETWLRNNPGRVVSKNIVCKLFGAAYNRAASMEVSVNSFRKTGLFPCDRNIFREHEYEEAARPEAEPAEASVANSNPAQPESPVTPCSSFVTPYAISPIPSTSRQQPMTSSRSGSANLITASPYKNKLTEKQVLKKNKSTLAKKGLFKKRKIQTKVHQKSSKKKKPIPSDSSSDSDDEVILQDSDSEYDEFEDDYDATCTRCSGRYSEDTRGEKWAKCSRCFKWSHEDCGGRKGSDFSCPFCEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283256;
- 90% Identity
- iTF_00283256;
- 80% Identity
- iTF_00283256;