Ccar002838.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:56276797-56282340[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-06 0.0013 20.1 0.0 4 40 18 55 16 59 0.88 2 2 3.2e-09 7.2e-07 30.6 0.0 5 40 458 493 457 497 0.92
Sequence Information
- Coding Sequence
- atgcCTAGAAAGTACATAAGAACCTCTGACAGAGGAAAATGGTCGCAATCTGACTTAGTCAACGCTATAAATGCGGTAAAAAATGACAAAATTCCAATTAGAGAAGCGGGAAGAACGTATAATATTCCAGAACACACCCTTCGTCGTAAACtcatcaaaaataattttgagaaaaaaGGGTTTGGACCGTCCTCATTGTTAGGAAATGATGCAGAACGAAAACTTGTGCAACACATTCAACAGCTTCAAGCGTCTGGATTTGCACCGACAAGACAAACAATTCAAATAATTGCTTTCAATTTAGCAAAAGAGTTAGGCTTggacaaaaaatttaatcaaaccaGTGGACGAGCAGGGCGCGATTGGTTCAAATCTTTTATGGAAAGGAATAACACCTTAAGTGTAAGAAAAGCAGAGGGTATTTCAGTTTCTCGGGCTCTGGGAATGAATCGGGAAGAAGTGAATggttattttgatttattaacaagaTTGCTAGTTGAAAATGATTTGATTGGAAAACCAGGGAATGTGTTCAATATGGACGAAACTGGATTGCAGCTTAATAACCGAACCGAAAAGGTTATTGCCACAAAAGGCAGCAAAGACGTCCACGTGGTAACGTCGGGCGAAAAGGGTGAAACTATAACAATTCTTGCCTGTTGCAACGCAGAAGGTAACTTCTTGCCACCTTACTGCATTTTTAAAGGCAAAAATAAAAAACGCGAATTTGAGGATGGTCTTCCACCAGGCTCTGTTGTCACAATGAATCCTAAGTCAGCCTATGTAACGTCTGAAATATTTATGGACTGGCTTGAATATCATTTTACACCAAAGAAACCAAGTGGCAAAGTGATTTTGATCTTGGATGGGCACGCGTCAAATATGAACTCTGAAAAAATGTTGGACTTCGCTGTTAATCACGACATAATATTACTTTGCTTGCCAAGCCATACCACACATTTTTTGCAGCCATTAGACCGCTCGTTTTTTAAACCCTTAAAATCATATTTCTACAAAGCATGTGCTAGTTTTATGTTGAATAATTCAGACCGGCAAATTAAACGTTTACAATTTGGATCTCTTCTCAATTCTGCCTGGTGTCAAGCTGCTACATCACAGACTGGCACATCAGGCTTCAGCGCAACAGGTATATTTCCTTTAAATCGTGATGCTGTTCCAGATCATGCATTCGCCATATCTGACAATGCCGTTCCTAATCTAGATTTCCCCTTAATTCCTCAAGATCCAGCTCCTCCCAATCCGGCTTCATTACCACCACAATCGCCTTTAGCTCCTTTCATCACAGAACCCACAACCAGCTCTCACAATAATTCCTCCAATTTTTTATCTCATGACCCGATTTCCAAGTATTTAGAAGAAGCAGTAAGGAAAGTGAAAAATGGACACATGTCTATTCGGCAAGCATCGGAGACCTTTGCTGTTCCATTTACAACCTTACGTAGATGGGTAAAAGAAGGAGACAAGCTTCTAAGCTATGGACGTCAACCAGCATTAACTGATGAAGAAGAATTGCAGCTTGTAAAAGGGCTTCTTTTGTGTGCTGATTGGGGGTTTCCTCTTCAAAGCAAAGACATTAGGTATATAGTTAAGGTTTATTTAGATAGTAAAGGTGTTGTAGAAAAAAGATTTCAAAACAATCTCCCAGGATTAGACTGGTTTTCTGCATTCATGGGGCGGCAcccaattttaacaaaaaaattgtccGAAAATGTAAAACGACATCGGGCAGCTGTAACAAAAGAAATGCTGAATGattatttcagtaatttaaaGGACTCATTGGATGGGATTGCACCTTCCAACATCATAAATTACGACGAGACAAATTTTACTGATGACCCAAAATCGGTAAAAGTTATCGTAAAACGTGGGTCAAAGCATTCAGCACGGATAATGGATACATCAAAAGCGAGTACCAGTGTCATGATAGCAGGCTCAGCAGATGGAAATATTCTTCCGCCTTATATCGTATATAAAGCTACCAACCTACACGATTCTTGGACAGAAGGCGGAATTCCGGGTGCAGCATATAATAGAAGCATCAGTGGATGGTTCGATGCACATATCTTTGATGATTGGTTTAAAACAATCATCCTTGCGTATGTAAGAAGGTTGGAGGGCCCAAAAGTCCTAATAGGTGACAACCTTTCCAGCCATGTCACCCTGTCTGTAATTAAAGCATGTGCTGATAATGACATTCGCTTTGTTTTGTTGCCACCAAACTCGACACATCTGTGTCAACCATTAGACGTAGCCTATTTCCGTCCCTTAAAAAGTGCTTGGCGTACAGTCTTGGAAGGATGGAAGATGAAGAATCGAGGAGTTTTTCCAAAAACAGTCTTTCCAGCATTGCTAAAGGCTACATTTGAAAAAGCCTACATGACTTCCGCAAAAAATTTGAGATCTGGTTTTGAGGCTTGCGGGATTGTACCCTTCAATCCAGAAAGAGTTCTTCGAAAACTCCCGAATGAAGACTCAATGTCTGTCTCATCAGATGAAGGCAACACCTCATGGTTGACTGCTTTTGTTGACCATCTGAAGCAGACAAGGTCTGAGGCCACCTCAAGAAACAGGCCAGCTCGTGGGAAAAAAATTAATGTGCCTCCTGGCAAAAGCTTTCAAGTTGGAGACGTAACTGGGAgcagagaagaagaaaaaactgAGGATGACCCTCCCGAAGTTAGCTCTTCACAGGCAACCACCAGCAAAGTTGATCAAGTTGAAATAGGAAAAGAAAGTGATGCTATTTGCGTAGGTGACCACGTTATTGTAACGTACAAAACTAACAAGCGAGACAGAACATTCGTAGGTAAGGTGGTGGCTTATACTGGCGATAGCTATACAGTGATGTTTCTCAGGAAGCGTGTGACAAAAAAAGAAACATACTTTGTCTTCCCAAACATTGAGGATAGACAAAAAGTAAGTAGGAGAGACATTGCGAGAAAAGTAAATGTGCGAGACTTAAGGAGGGGTCGGTTTGTAGTTTTAGGAATGGACGTTGCATTATTAGAGTAG
- Protein Sequence
- MPRKYIRTSDRGKWSQSDLVNAINAVKNDKIPIREAGRTYNIPEHTLRRKLIKNNFEKKGFGPSSLLGNDAERKLVQHIQQLQASGFAPTRQTIQIIAFNLAKELGLDKKFNQTSGRAGRDWFKSFMERNNTLSVRKAEGISVSRALGMNREEVNGYFDLLTRLLVENDLIGKPGNVFNMDETGLQLNNRTEKVIATKGSKDVHVVTSGEKGETITILACCNAEGNFLPPYCIFKGKNKKREFEDGLPPGSVVTMNPKSAYVTSEIFMDWLEYHFTPKKPSGKVILILDGHASNMNSEKMLDFAVNHDIILLCLPSHTTHFLQPLDRSFFKPLKSYFYKACASFMLNNSDRQIKRLQFGSLLNSAWCQAATSQTGTSGFSATGIFPLNRDAVPDHAFAISDNAVPNLDFPLIPQDPAPPNPASLPPQSPLAPFITEPTTSSHNNSSNFLSHDPISKYLEEAVRKVKNGHMSIRQASETFAVPFTTLRRWVKEGDKLLSYGRQPALTDEEELQLVKGLLLCADWGFPLQSKDIRYIVKVYLDSKGVVEKRFQNNLPGLDWFSAFMGRHPILTKKLSENVKRHRAAVTKEMLNDYFSNLKDSLDGIAPSNIINYDETNFTDDPKSVKVIVKRGSKHSARIMDTSKASTSVMIAGSADGNILPPYIVYKATNLHDSWTEGGIPGAAYNRSISGWFDAHIFDDWFKTIILAYVRRLEGPKVLIGDNLSSHVTLSVIKACADNDIRFVLLPPNSTHLCQPLDVAYFRPLKSAWRTVLEGWKMKNRGVFPKTVFPALLKATFEKAYMTSAKNLRSGFEACGIVPFNPERVLRKLPNEDSMSVSSDEGNTSWLTAFVDHLKQTRSEATSRNRPARGKKINVPPGKSFQVGDVTGSREEEKTEDDPPEVSSSQATTSKVDQVEIGKESDAICVGDHVIVTYKTNKRDRTFVGKVVAYTGDSYTVMFLRKRVTKKETYFVFPNIEDRQKVSRRDIARKVNVRDLRRGRFVVLGMDVALLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -