Basic Information

Insect: Catonia carolina
Gene Symbol: bab2
Assembly: GCA_035578175.1
Location: JAQMRL010000008.1:52563174-52585083[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.5e-05 0.0034 18.8 0.2 1 38 283 319 283 323 0.91

2 3 2.9e-10 6.6e-08 33.9 0.0 2 39 334 370 333 375 0.92

3 3 0.19 42 5.7 0.0 12 36 395 419 393 427 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.5e-05	0.0034	18.8	0.2	1	38	283	319	283	323	0.91
2	3	2.9e-10	6.6e-08	33.9	0.0	2	39	334	370	333	375	0.92
3	3	0.19	42	5.7	0.0	12	36	395	419	393	427	0.80

Sequence Information

Coding Sequence: ATGACAATTCCACATCATTATAGCATGAAATGGGATAATTACCACAGTCATGTTGGGGATATATTTTCACAGTTATTAGAGACAGGTTccatggccgatgtaattttgtATGCAGAAGGGGAAAAAATAAACTGTCATAAAATGTTATTGTCTGCTTGTAGTCCATATTTTCaggaAATATTATCAACTGCTGGTGCTAGTAACACAATTGTTGTTGTCAGTGGGATATGTGGTGAGGATGTGAGATCCATTATCGAATTTGTGTATAGAGGTGAGATAAGTGTGAAGGCTGACCGGTTTAGTTCTGTTCTAAAAGCTGCGGAGGCATTGAAGATATGTGGACTAATGGAAgtaAGTAGTCATTTAGCAGAAATGGAAGAATCAGAAACAATAATAAGTAATCAGAATttggaaaaagaaaataaatcttaTAAAGAATTGAATCGTGGAAATTTAGTtactataaaagaaaataacagaaaaagtgaaaataatGTGACAACAGAAAATTCAAAATGGGATTGTATTCAAGTACCTGtacataattataacattttagaAACTAATAAGACTGAATGTAATAGTATTACAAATAACGAAAATGTTAATATTGCAAACGCAGATTGTTCATTAAATGTTAAAACGAATGAACCTATTGACATAGATGTAACGCCTGATATTCAAGTAGCTGATGATCAGAGTAATGAAAATTCATACAAAGTCAATTTAAAACAAAGTTTGACTGATGAAATTTCTGTTAAACAGGATACTGGAATGTCTGAAGAAGAATCATCCTGtgaagaatttaaattaaaacgaaGAAAAGAGTATCGTAAAAAAATGTACAGTGAAGAAGCGATGACTGCTGCTTTAGAAGATATGAAATCAGGTAAAAACCTTGTAAAAGCCGCTGCAAAACATCGTGTTCCTCGAACTACCTTATATATGAGAGCAAGGGCTATTGGTGCTTGCGCAGCAATGGTTAGAAAAGGATATCCACGTGAAAAAATAACAGCTGCTCTTAAATCTGTAGCAGgtGGTTCTAGTTTACAGTGCGCTGCAACTGAATTTGGTATACCGAAAACTGTTTTATGGAGACGTGTTCAAAAAGAAATTGGAAATACAACACATAATAAACGTGTAAAGCAAATCGTCACATCTCAAGTTAATCCTAAAGAAACTGTTTTACAGGAAGGAGTATCAATTACAAGAGTTTCACCACAATATCAGATTCCAAAGGCAACTCTATTTCGATGGGAAAAAGTCCATTTAACAAATGAGGCAAAATTATCTACTACCTTTGTTAAAGATCCAACAAGTAAACAAGATATTGGTAATGAAGTGCAATTAGAACCTGGTGTTGTTGCTACAACAAATTTAACTGATCGAGAATTTTCACACggatcaaaaacagaaaaatttaagATTCAAAAATCAGCACTGTGGGGCAATATTCAAAACAGTAGTGATTCTGGAGAAAACAATCAACAGCATAGAATTTTCTTAAAAAGTGAAAATGAGGATTCAGTTGCAGTAGAACAATTAAAGCAACAACAGCCTGATTTTCATTTCTCAGAGGGTGTTCATGAGCTTCCAGTAAGTTATGTTAACAATACGCAATTTTCAGATTCTTCTATCATAATACTAGCCCCTGTTGAAAGTGACAAGTATACTATACAACAACAAGATCAAGAACAACAAAGTGATGAGGTTCACATTTCTAATACAATGAGTACTGAAGAAGTTCTAAGATCAGTTAAAGTAGAAAATAACTCTACAGATACaggtaaaaaaattactttacctTACATTCAAAACTTAGAAATTTATCTTATAGACCTCAAATAA
Protein Sequence: MTIPHHYSMKWDNYHSHVGDIFSQLLETGSMADVILYAEGEKINCHKMLLSACSPYFQEILSTAGASNTIVVVSGICGEDVRSIIEFVYRGEISVKADRFSSVLKAAEALKICGLMEVSSHLAEMEESETIISNQNLEKENKSYKELNRGNLVTIKENNRKSENNVTTENSKWDCIQVPVHNYNILETNKTECNSITNNENVNIANADCSLNVKTNEPIDIDVTPDIQVADDQSNENSYKVNLKQSLTDEISVKQDTGMSEEESSCEEFKLKRRKEYRKKMYSEEAMTAALEDMKSGKNLVKAAAKHRVPRTTLYMRARAIGACAAMVRKGYPREKITAALKSVAGGSSLQCAATEFGIPKTVLWRRVQKEIGNTTHNKRVKQIVTSQVNPKETVLQEGVSITRVSPQYQIPKATLFRWEKVHLTNEAKLSTTFVKDPTSKQDIGNEVQLEPGVVATTNLTDREFSHGSKTEKFKIQKSALWGNIQNSSDSGENNQQHRIFLKSENEDSVAVEQLKQQQPDFHFSEGVHELPVSYVNNTQFSDSSIIILAPVESDKYTIQQQDQEQQSDEVHISNTMSTEEVLRSVKVENNSTDTGKKITLPYIQNLEIYLIDLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00283738;
90% Identity: iTF_00283738;
80% Identity: iTF_00283738;