Ccar044528.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- bab1
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000008.1:108601816-108646709[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-08 4.9e-06 27.9 0.0 4 35 36 68 33 76 0.89 2 2 5.9e-15 1.3e-12 48.9 0.0 1 43 196 239 196 241 0.95
Sequence Information
- Coding Sequence
- ATGCTAGAGTCATCTCATGCTTCTTGGCTCGGTGCCTCCACATCTTCGTTGGCCGatGGTTGTACTTCCCTTCTGAAAATTAAAGCACCGACTTGGACACAATCACAATTAAAAGAAGCGATTCAAGCTGTAGTGACTCAAAAAATGCGTTTCACTCAAGCATCTGCTCGTTATGGTATACCAAAAGGAACGTTATACGACAATATATTGGGTAAGACTAAACGGATGATGGCTTTGGAAGAAGTCGGATTAACATTTGAAGAAGAAGCGGCCATATTGGAATTCTGCTGTGAAATCTCCGTCTCACCTTACAATAGACGTACTAGGAAATCACTCCATGATATCATTGAATTcgttgaaaatttaaagaaatcacGTGATCCTGAATTTTCTTTCAATGGGCTTTCCGGATTTCGTTGGTGGTGGGCGTTTTGTAAGAAACATAGCATCGTCTCCTTGTATTACGATGCTCAttCAGACAGTTATCAATACCAGTTGCAGTCAATGTGGCAAAAATGTTGGAACACAAATCAAAGTCTTGTACATAACTTACGATTTCGTGAACGAGGTCCTCTTAAATCGTGGCGACCGGAAACAATGGCTGAAGCGATATTATCTGTTCTAAAAGAAGGTCTTTCATTATCTCAAGCTGCACGGAAGTATGACATACCTTACCCAACATTTGTACTTTATGCAAATAGAGTTCATAATATGTTGGGGCCTTCTGCTGATGGGGGAACTGaTTTGCGTCCAAAGGGGCGAGGCCGTCCTCAAAGAATCTTATTGGGTATTTGGCCAGAGGATCATATACATGGTGTTATCAGAGCGGTTGTCTTCCGAGATCCACAACATATGAAAGAAGAAGCCCTCAATTTAGGATATCATCGAATTCCTGAACCTATGTATGGCTCACCAAGTGGTTGTACAGAAAGTAGTGGTGGTGTTTCCCCTGGATCAGCAGCAGCAGCTGCAGTTGCAGCAGTAGCTCAGGGTCTTCGGCAACAAATGCTTGCTGCAGCTCATCACCACGGTAATGCTGCTGATCATCACTTCAACTTCCTCGCTGCCCATTGTGGGAACGGTACAGGTCTTGGAATTCATAGTCCTTTACCAAGTCCTGTTGACTCTTCTCCAAGATCCTCGCCCCTTTCAGCTGCTACAAGTTCTGCCAATAATATAGAGgcTCTAAGTTATAAACAATTAAACGATAACCTCAGTTTAGGGAGAGCAGAACATTTATTCCAAGATGAAATAGAAGACCTGGTTACTAGACCTAAGCCTTCTGAAACTCCTAAAATTAATAAgTCACATCCGTTATTATCGCAACAGGGTCCTGGTCATTTGCATAGTAGTGGTATTTCTTCTTTATCGGCTTATAAAACTCCGTCGATGACGCACCTAATACGGCCTGAACAGCTCTTCCAAGATGAAATTGAAGATCTTGTGAAAAGGCCTCAGTCTTCTGAAACGcctaaagCGCCACAACCACCTCTTACTCCACCTCAGTCTCAGGGTCCTGGTTTAATACACTCCGGTGGAGTACCTCCTATTTATAAACATCCAAATAGCAATTCCAGTCATGGACCATTATCTATGGTTCGTGCTGACCACCTCTTCCAAGATGAGATAGAGGACCTTGTGAAAAGACCGTCATCTCAGCCTATGGAAACCACTCCACAGAAAGTCAAAGTTGGTATTGGTATGACGTATAAACCAACAAATGACACATATTCGAATCAACGGCCAGATTCATTATTCCAAGACGACATCGATGAACTAGTCAAATCTCCACAGGCTGCACCCAATCAAAATGAAAAAGCCCTTCCTCTTCAAGTCGATCAGCGGATAGACTAA
- Protein Sequence
- MLESSHASWLGASTSSLADGCTSLLKIKAPTWTQSQLKEAIQAVVTQKMRFTQASARYGIPKGTLYDNILGKTKRMMALEEVGLTFEEEAAILEFCCEISVSPYNRRTRKSLHDIIEFVENLKKSRDPEFSFNGLSGFRWWWAFCKKHSIVSLYYDAHSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGIWPEDHIHGVIRAVVFRDPQHMKEEALNLGYHRIPEPMYGSPSGCTESSGGVSPGSAAAAAVAAVAQGLRQQMLAAAHHHGNAADHHFNFLAAHCGNGTGLGIHSPLPSPVDSSPRSSPLSAATSSANNIEALSYKQLNDNLSLGRAEHLFQDEIEDLVTRPKPSETPKINKSHPLLSQQGPGHLHSSGISSLSAYKTPSMTHLIRPEQLFQDEIEDLVKRPQSSETPKAPQPPLTPPQSQGPGLIHSGGVPPIYKHPNSNSSHGPLSMVRADHLFQDEIEDLVKRPSSQPMETTPQKVKVGIGMTYKPTNDTYSNQRPDSLFQDDIDELVKSPQAAPNQNEKALPLQVDQRID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -