Ccar053708.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- bab2
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000016.1:7051849-7092487[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 4.1e-08 34.6 0.0 1 39 489 528 489 532 0.90 2 4 3.9e-12 8.9e-10 39.9 0.1 1 39 543 581 543 584 0.95 3 4 9.3e-17 2.1e-14 54.7 0.0 2 45 599 643 598 643 0.97 4 4 6.7e-19 1.5e-16 61.6 0.1 1 43 650 693 650 695 0.96
Sequence Information
- Coding Sequence
- ATGGCAGGCCAGCATTACTGCCTGCGCTGGAATAATTACCAGTCTAATATGACTTCGGTATTTCATCACCTTCTGAGGACGGAAGCATTTGTGGACGTCACTCTTGCATGCAATGAAGAATCTCTGAAAGCGCACAAAGTTGTTCTGTCGGCGTGCTCATCATACTTTCAAAAATTACTTTTGGAAAACCCGTGTAAACATCCAACGATTATTATGCCGCAGGATGTTTGTTTTAGTGATCTTAAATTTATTATCGAGTTTGTTTATAGAGGTGAAATTGACGTTTCACAGGCTGAATTACAAtcATTGTTAAAAACAGCGGATCAGTTAAAGATTAAAGGATTATGTGAAGTACCTGAAGGCAGCGATGGTAAAGAAATGATCGGCGCAGAAGTTACACCGTTACCGGCACCACCGTTAACGACAACTCCCGTTCATAGACGGTATACGAAATTAAGAAGGTTAAACGCGAACAGTCGTAGAAGATTCGAAGCGAGAAGACAGTTGTATCGCGATAGACAAAACGTTGTCACCGGCAATAACCAACAACACCAGCCACCGCAGCAGCAGCAAAACGGCCAACATCAAATCCATCACCAACAACAAACTCAACAACCTCCTCCGCCACCGCCTCCATTACCACCACCACCTCCTCATCTTCAACAACATTCATCTCCCGAACAACATTCTCCGCATTCGCAACACGGTCCATTAATTCAGGCGGTCGTCGCGACCAGTATTCATAACGATACGCGACAAAATGAGGTCTGTGATCAGTTAGGTCAACCGAACACCGTTTCCGGTTGTATAACGGTTGGCACTTCGACCGATGACGACCAAAAGCCAGGAGAAATGCCCGTCGTTATATTAGAGAGTAGAGTTAGTCATGACCACACGTCACACACGCCTCCGCAACAATTAACACTACACACGCATCCTCATTCTCATCCTCATCAACATCCCACGGAGACGAGAATCATGATGACTAGTCCGGCACCCATCATGTCTACTCATTCCATTCCCACTACGCAACAGGTTGTACTGGAGCCGCCATCTGGTCAACCTGGTGATGTCGAAATGAGTGATGCTCAACAACCGAGTGGTCCGACGGCAACTTTGGTTTCTACAATCGGTATAGATACTAATTCTCCTTCTTCGGATCATATGCAAGAAACGGGCGGAATGAGGCCGGAGGAAGTAAAGGACGTTAAGGTGAAGTTTGAGACGCTAAGAGCAATGGATCAGGCTGATACGTTAGACATTGATAGTCACATGTCACACGAAAGGGTTAGAAATTCGGTTGTCGTTAAACCGGGTGTTGGAGTGGGTGATGAAGAACATACGATGCATACGATGATGATAACGCCTGAATTGTTGGGTCTTATACCATCTACATCTGGACACGGAGatgtaAACGGAAACATGTCGGATGGTCCGAAAGGTGCCGGATTAAATAAAAGTTGGACGCAAGAAGATATGGAAATGGCTTTAGATGCGTTAAGGAATCATAATATGAGTTTAACGAAAGCTTCGATCACGTACGGTATTCCATCGACGACCTTATGGCAACGTGCGCATCGTCTCGGTATCGACACGCCAAAAAAGGATGGCCCTGCCAAATCTTGGACTGAAGATATTCTTAACGTCGCTTTAGAAGCGTTAAGAAACGGTTCGATTTCGGCGAATAAAGCTAGTAAAGCGTATGGCATACCAAGTAGTACGTTATACAAAATAGCGAGACGGGAAGGTATACGATTGGCCGCTCCATTTAATGCAGCGCCTACCACATGGAATCCTGATGATTTAGAAAGAGCGTTAGAAGCGATTAGATCGGGCCAAACGACCGTTCAGAAGGCATCAGCTGAATACGGAATACCATCTGGTACCCTTTACGGAAGGTGTAAACGTGAAGGTATCGAACTATCGCGGAGTAACCCTACACCATGGTCGGAGGATGCGATGAACGAAGCTCTTGAATCTGTCagGGTAGGGCAAATGAGCATCAACCAAGCCGCTATCCATTACAACTTACCATATTCTTCATTGTACGGAAGGTTTAAAAGAGGTAAATACGAAGCGGAACATAACGATGTCGCTAGCACAACATCCGAAGTAGAGGTTGTCACGTCAATGGGAAGCGTCGGAACTCCGCAACACAATTCATTAGGAGGACCTCCGCCACCACCTCCGCATATACCGCCTCAAATAATGCTCGTTCAATACCAACAAGCTCCTCCACAGTTACAAATGTACCAGCATGCGCCTAGTTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHHLLRTEAFVDVTLACNEESLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEGSDGKEMIGAEVTPLPAPPLTTTPVHRRYTKLRRLNANSRRRFEARRQLYRDRQNVVTGNNQQHQPPQQQQNGQHQIHHQQQTQQPPPPPPPLPPPPPHLQQHSSPEQHSPHSQHGPLIQAVVATSIHNDTRQNEVCDQLGQPNTVSGCITVGTSTDDDQKPGEMPVVILESRVSHDHTSHTPPQQLTLHTHPHSHPHQHPTETRIMMTSPAPIMSTHSIPTTQQVVLEPPSGQPGDVEMSDAQQPSGPTATLVSTIGIDTNSPSSDHMQETGGMRPEEVKDVKVKFETLRAMDQADTLDIDSHMSHERVRNSVVVKPGVGVGDEEHTMHTMMITPELLGLIPSTSGHGDVNGNMSDGPKGAGLNKSWTQEDMEMALDALRNHNMSLTKASITYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDILNVALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALEAIRSGQTTVQKASAEYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMNEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEHNDVASTTSEVEVVTSMGSVGTPQHNSLGGPPPPPPHIPPQIMLVQYQQAPPQLQMYQHAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283717;
- 90% Identity
- iTF_00283717;
- 80% Identity
- iTF_00283717;