Cspo042199.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751356.1:9493916-9499497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 29 6.7 3.1 1 23 156 179 156 179 0.97 2 11 0.022 2.5 10.0 3.6 1 23 186 208 186 208 0.99 3 11 0.096 11 8.0 0.6 2 23 213 235 212 235 0.87 4 11 0.019 2.2 10.2 2.3 1 23 246 268 246 268 0.98 5 11 8.2e-05 0.0096 17.7 0.3 2 23 273 295 273 295 0.96 6 11 0.00028 0.033 16.0 0.7 1 23 302 325 302 325 0.98 7 11 0.17 19 7.3 4.5 3 23 333 353 332 353 0.96 8 11 1.6e-05 0.0019 19.9 0.1 1 23 364 387 364 387 0.96 9 11 0.00035 0.041 15.7 4.6 1 23 393 416 393 416 0.95 10 11 0.0002 0.024 16.4 2.2 3 23 427 447 426 447 0.98 11 11 0.0017 0.2 13.5 2.6 2 23 454 476 453 476 0.95
Sequence Information
- Coding Sequence
- atgtataatagtatatattttcAGTTTGACTTCAACGATGCGTACGTTTGCCTCATATGTCATAATATGCTAAAGAAGATTGAGTTGTTCAAACTGCAGGTCGAAGAAAACATAGGATTACTTACCGATCAGGCTGACATCTTAAAAATTACCAAGCTTCACAACCTTCAGCACTCAAACCCACAAATCACCGACTCTACAGAGCCTGATCCAACCGACTTCGAAATCAAGCCTGAAGTCGTTGACATCGAAGTCATAGAACACGACATTCATACAGACGTTAAAGTTGAGCACGACTTTTCTGACTACGAAAGCGAAGTCCCGTTGACTTCTATTAAGAAGAGAAAGCGAGAGAAACATGTTAACAAGTATGAAGGAAAGATAAGAGTAGTCACGTTGACTTTAGAGGAGTTGAAAGAAGAAAGAGAGAATATGGCTAAGCAAGAGAAGTATTTGACTTTGCCATATAAATGTGAGCACTGTATCACGGGATTTGATCATGAAATTACTTGGAAAAGTCACATGGAGAAGCGACATAAGAAGactAAAAACAGTTTTCAGTGCGACATATGCTATTCTGTATTAAGCTCTAAGCATTCTTACAATGAACATAGAAAGAGGCACGAAAGGAGGTTAGAATGCATGGTATGCGGTAAACGATACAACCACGAGCAGTCAGCTATACAGCATTATGATGAGAAGCACCTGCCGGCTGGCTCGTCTCTCCAGCGTGGTTATACCTGCCGGGAGTGTGGGTTCACCACTACAGTAAACCGCACATACCGCTATCACCTCGACAAACATAAACAGAAGAGAGAGTGTACGCTTTGCGGGAATACCTTCGTCAACGCTAACAGTCTTAAAATGCATATGTACACAGTACACAAGCAATCATCACGGGTGTACCGCTGCGATCCGTGCAATAAAACATATCGCGCTAAATCTGGGCTGGTATCGCACTTGCGCACTACGCACGCGGACGCGCCTCGTGCATACTGTGCGCTGTGTCGCACGCACTACATGACGCAACACGCTCTCAAGACGCACTTAACTACGCACTCGAGGCATGTCAGCGATAGTGATAAAAGataCATTTGCGACGAATGCGGGGCCAAGTTCGTAAAGAAGTACAGTCTACAGATACACATCAACTGGGAACACCTTAAATTGAACACACACCGCTGTGTTAAATGTTCTAaaGTATTCAAAAGCGCTAAATCACTCCATCGGCACGTTAACTATGTTCATAACAAACAGCGCCCGCCAAGAAACAAGATTTGTCACTTCTGTGGACGAGGTTTCACTacGCAGAACATATTGCAGTCACATCTTCGCACCCACACTGGAGAAAGGCCGCTTCAATGTCAACACTGTCGGGCAACGTTCGCTCACTCTGGCGCCCTCTACACGCATATAAAACTCAAACATACaggactaaataaataa
- Protein Sequence
- MYNSIYFQFDFNDAYVCLICHNMLKKIELFKLQVEENIGLLTDQADILKITKLHNLQHSNPQITDSTEPDPTDFEIKPEVVDIEVIEHDIHTDVKVEHDFSDYESEVPLTSIKKRKREKHVNKYEGKIRVVTLTLEELKEERENMAKQEKYLTLPYKCEHCITGFDHEITWKSHMEKRHKKTKNSFQCDICYSVLSSKHSYNEHRKRHERRLECMVCGKRYNHEQSAIQHYDEKHLPAGSSLQRGYTCRECGFTTTVNRTYRYHLDKHKQKRECTLCGNTFVNANSLKMHMYTVHKQSSRVYRCDPCNKTYRAKSGLVSHLRTTHADAPRAYCALCRTHYMTQHALKTHLTTHSRHVSDSDKRYICDECGAKFVKKYSLQIHINWEHLKLNTHRCVKCSKVFKSAKSLHRHVNYVHNKQRPPRNKICHFCGRGFTTQNILQSHLRTHTGERPLQCQHCRATFAHSGALYTHIKLKHTGLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281737;
- 90% Identity
- iTF_00281737;
- 80% Identity
- -