Cspo018675.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751337.1:24066402-24080224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 3e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 0.11 13 7.8 0.1 1 23 996 1019 996 1019 0.92 3 13 1.1e-05 0.0013 20.4 2.2 2 23 1131 1152 1130 1152 0.97 4 13 0.0002 0.023 16.5 2.5 1 23 1158 1180 1158 1180 0.98 5 13 0.0093 1.1 11.2 2.5 2 23 1187 1208 1186 1209 0.95 6 13 0.82 96 5.1 1.2 5 23 1222 1240 1221 1240 0.96 7 13 0.0092 1.1 11.2 1.7 3 23 1247 1268 1246 1268 0.96 8 13 0.031 3.7 9.5 0.0 2 23 1286 1306 1285 1306 0.96 9 13 0.0003 0.035 15.9 2.3 1 20 1312 1331 1312 1334 0.91 10 13 0.77 90 5.2 0.1 1 23 1342 1366 1342 1366 0.87 11 13 0.0066 0.77 11.7 7.2 1 23 1372 1394 1372 1394 0.98 12 13 1.9e-05 0.0022 19.7 2.2 1 23 1400 1424 1400 1424 0.98 13 13 0.0005 0.058 15.2 5.0 1 23 1430 1452 1430 1453 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGCTCGTGCAGTGTCCCGTGTGCACGCTGTTTCTGCACAATGGCATGACCCTGGAGTCACATCTGGACACACATCCAAAAGATCAAgttataaaagcattgtgtaGTCTCACAACAAAGCCTCCCAGCTATGGAAGCAGGACTTCCACTCCTTTACATTCAGAACGGTCATACAGAAGCAGGTCACGGACACCTGCCACAGACGAGAGCAGGTGGAATGGCTCCCATAGAAGTGATGAACGGTATTGGAGGAGAACACCAAGTAGAACACCCAAAGCTAATGCTTTGTCAAGTACCTCTAGAAACGGAACTCCAGATATGCGTTTGGTTGatataaattttgaaaacaATAGTGGCTCTAGCAGTGCAGCACAACTTTCAGGTGCTCCATATGTAATGAAAGCAGATAAAATTCAACAAACTTACCAGTCTCCTCCAATATCTGATTTCGATTCACAGTACATTTATTATGATCAACCAGAAGATAGAGAGGTCAAATATTCTCGTAGTGCTGAATACAACTCTATGAGTAGTCCTAACAACATGTTTGCCTACAACAATGTGGTGCCAGCTGGAGGATCTGCTGTCAAGTTATTACCAACTATGCCTAAAAGAGGGAATGATCTAACAAAAATTTTACCTAAACCAAATAATATTCTCCTTAAAAACATGGGTGGTGTGCAATATTTAAGTCCAGGGTCTAAGCCGATGCATGTTATGATGCCGAGTGCATCTACATTTGTTCAGAAGAATGTCCAGAACAATATGATAATGACAAGTAGTATGCCAAATCTGCAGATTCAAATAGACACCAAATCAGGAGCGCCACCTTTGGCCGGTAACCAGCTGAACCAAATGACATCTAGTGCTTTCACCCCTGGTACTACTGTTGTTGCCCAGAACTCCCAAATAATTTACAGAGAAATGGTAAACAATATAGATGGTAAACCCTTTATAACAAGTATGCCTACAATCATGAGTGCTCATGATAATGTCACAAATCTAGCTCAAACCAGCTCCTTGTACCAAAATGTAATGGTCGTAGATCAGTTTGGAAATACATCTTGTATGTACACATCGCCTCAGCAAATAATGTCTAAATGTCCAACAAGTGTCTATAATAAAACATCATCAGTACCATCAAACTCTATACATGTTGAGAAATCTACAAATGGAAGTGACCCTAAAACTCTCATAATTGAGGTTGGGCCCATTGTACCGCCTGGCTTGGAAAGTGAACCTAGTTCCTCTGCCCCTCAGTCAAACTTGAATAGTCCCATTGATAAATCTGAAAAGAGAATGAGCGACAGTGATGTAAGGAGTGAGAATCAGGGGTCTACGAAAGGGTTGAAAAtccttagtaatataaaagttgAAGTTCCAGTGCAGCatcacaaaaatatggtaaataCTGTAATGGATCTCACAGGACCAAATGATTCAGAGTATCCTATGGAACGGGTGCCGTCACCAGAGAAAATACTGCCAGACCTAGATGACAATGATAACGACGATCCTCAAATGTTGTCTAGTGCATGCATACAGCCGTCTGACTCCAGTGCTGATAGTGTAGCATCCTCATTTTCTGTGATAAAACATAAATCTTCCTTAAaagaatcaaataaaaataatgttgataGTAAAATAGATACTGAGTTCTCAGACAGTTGCCCTGTCCCAGATTTAATCTGTAATGAGAAGCCCTCAATATCTCCTTGTAGTGAGTTGTCAGAGAATGGTGATAATTCAACCGATCATACCTCAATATCCCCTAAACCTGTGAGTAGTCAAGTTAGCCATAGTAATATAGATCAGCCAGAGAAGAAGATCCAGCACCCACAGAAGCCGTACCGGCACAACACATTAAGACTGAACAATATTTATGTGAAGAAACATGCAAAAGTTTTGCAGATTAAGAATGCTAAGGGGTTTCCTGCAAGTAGTACAAGTAAAACATCAGAAACTATAGCATCTTCATCCTGTGGCAAAGCACCAGAAAATTTTACAATGAATAAATTGCATCAGACAGATAAAAGTGACAGTAAGGAGAAGCCCAGTATGTTACAAACTATATCAGTAGAGGTGATCAAGGagaatgatgataataatgagTTTGATGCTGACACAGAGGAACAGTCCATGGACATTGAACCGGTGGCACCGTCAAGTATGAATGAGCAGAATGAGTTCAATGCAAACACAGACCTAGTTCAGGTCAAGGAGGAAATAAACTCGAGTAACGAAGGTGGTTTCAGTAATCACACGGCAACGTCAGACCGCGAGCTAGCGCCAATGGAAACGTTGCGTCCCATCAATGTGGTTTCGTACGCGAACATGTCGGGCGACTTCGACGAGGACTCGACCGATAGGGAGTTGCTGGACCTCGAAACGGCGTCGAAGAACAAACAGTTTGTTAGTATGATGAACGAGAATTACTTCGGCGATAATATCTACGCGGACTACTTCACCCCAGACCGGGTGGAGTCGTTCGACGCGGAGCGCGAGGCGGCTGGGTTCAAGGAGGGTCCCAAGGatggtatgtataatatttgggGTGAGCCATCGCAAAAGGAGAATGAGAACGAGTTTGTTCTACCTAACTTCATTCATGAGAGCTACAAAATAGCAGAGAGTAGTGGAATAGATTATTCGGAGATTGGTAGAGAGGGACAGGGAGATGGCGAAGGTGAGCGAGATAGCAAGGCAGACGTGTTGAGCGAAGATCGGAGTGAAGGTGAGGCGCCGCTGAACATTTGCGCTGACGAGCGAATGCCGCCGAGAGGTGAACTGAGCGGACAGGAGAGCAACGGAGACATGGAGCCGCCATGGGGCGGGATGTATACGGACGTACCGGCGACGGAACCGTACGACCTGATCGCGAGGGAGAGCTGGGTCTCGGACGGCTCCGACGTCGACGTTAGTGAGAAGAGAGAAACACTCGAGGAGGAGCTGCAGTTCCCGAAGGCGTTGGCGCGCGCGCACCCGTGTCCCAGCTGCGACCTGAAGGCGAGCTCGCTGAAGGAGCTGCGCGCGCACCGGGCGCTGGCCCACAGCGCCGCGctgcccgccgccgccgctgctGCCGCGCTCAAACACGCGCCACACACCTACAGCCGCCTCGTTACCGACAGGAAGATTAAGAAGGAGGAGAAGTCGCACGATGTCGTTGCTCTCAGTAACAACCTCTTGTCAATAGACTCCAAAGAGCCGATCACGTCGACCATCCTGCAAGTGTACGACACTCTTGAAGAGGCGAAACCGAAGATCGAGGGTCTGATCAAGCAGGAGACGAAGCGGAGACGGAAGGACTACATTTGCCCCACATGTAAAGTAGACCAGGAGACCGACGCTGCGTTCAACGCTCACCTAAAGATTCACCCGTTAGAGTGTCTGACATGTGGCAAGTGCTTCTTCAGAAGAGCCAATCTAGCGCTACATATGAAAACACATTTAGGGATTAAGAATTATAAATGCGAGGTATGCGAAAAGCGGTTCATCACTCGACAGAAACTGATGGAACATCACAACGTGCACACCGGGCGGCAGCCTGTCAAGTGTACCGTGTGTGACGACACCTTCCGCCGGTACTCCAACATGGTGCAGCACAGgGACCGGCATCACCTGGCGAAGCGAGCCAAGGTGCGCGACTACGTGTGCCAGTGCGGCGCCGTATTCCACTCGCGGGCGAAGCTGTCGTGGCACAAAGAGACGCACGACGAGCGGCCCAAGGCGTGCCTGTACTGCAGCGACAAGTTCGTGCACGCTTCGTCGCTCACGCGCCACGTGCGCCGCACGCATAACGAGTACTTCCTCAGCAAGGGCGCGCCCGGCGGCAAGGGCGAGAACGTGCCCTGTCCCGTCTGTAAACAGGTGTACCTGCGTGCGAACTTGCGCGCGCACGTACTGACGCACAGCGGCGCGCGGCCGCACTCGTGCGTCGTGTGCAACAAGAGCTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACCTGTCGCGCTCCGCCAAGCCCTTCCGCTGCAGCGTGCCCGCCTGCGCCGGCGCCTTCATCCGCCACAGCGAGTTCGTGGCGCACATGAACGCGCACAAGTCCGTGCGCCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGATGGCCAAGAAGTTCGTGTGCAAGGTGCAGGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTCTCCGAGCACATGAAGGTCCACAGCGGCGCGCGCCCCTTCTCCTGCAACATCTGCGGCAAGACCTCCAGCAACAAGTCCAACCACAACAAGCACGTGCGCATCCACCACGCGCGCGAGCCCGTCGCCACCGAGGCGTGA
- Protein Sequence
- MDQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSLTTKPPSYGSRTSTPLHSERSYRSRSRTPATDESRWNGSHRSDERYWRRTPSRTPKANALSSTSRNGTPDMRLVDINFENNSGSSSAAQLSGAPYVMKADKIQQTYQSPPISDFDSQYIYYDQPEDREVKYSRSAEYNSMSSPNNMFAYNNVVPAGGSAVKLLPTMPKRGNDLTKILPKPNNILLKNMGGVQYLSPGSKPMHVMMPSASTFVQKNVQNNMIMTSSMPNLQIQIDTKSGAPPLAGNQLNQMTSSAFTPGTTVVAQNSQIIYREMVNNIDGKPFITSMPTIMSAHDNVTNLAQTSSLYQNVMVVDQFGNTSCMYTSPQQIMSKCPTSVYNKTSSVPSNSIHVEKSTNGSDPKTLIIEVGPIVPPGLESEPSSSAPQSNLNSPIDKSEKRMSDSDVRSENQGSTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPNDSEYPMERVPSPEKILPDLDDNDNDDPQMLSSACIQPSDSSADSVASSFSVIKHKSSLKESNKNNVDSKIDTEFSDSCPVPDLICNEKPSISPCSELSENGDNSTDHTSISPKPVSSQVSHSNIDQPEKKIQHPQKPYRHNTLRLNNIYVKKHAKVLQIKNAKGFPASSTSKTSETIASSSCGKAPENFTMNKLHQTDKSDSKEKPSMLQTISVEVIKENDDNNEFDADTEEQSMDIEPVAPSSMNEQNEFNANTDLVQVKEEINSSNEGGFSNHTATSDRELAPMETLRPINVVSYANMSGDFDEDSTDRELLDLETASKNKQFVSMMNENYFGDNIYADYFTPDRVESFDAEREAAGFKEGPKDGMYNIWGEPSQKENENEFVLPNFIHESYKIAESSGIDYSEIGREGQGDGEGERDSKADVLSEDRSEGEAPLNICADERMPPRGELSGQESNGDMEPPWGGMYTDVPATEPYDLIARESWVSDGSDVDVSEKRETLEEELQFPKALARAHPCPSCDLKASSLKELRAHRALAHSAALPAAAAAAALKHAPHTYSRLVTDRKIKKEEKSHDVVALSNNLLSIDSKEPITSTILQVYDTLEEAKPKIEGLIKQETKRRRKDYICPTCKVDQETDAAFNAHLKIHPLECLTCGKCFFRRANLALHMKTHLGIKNYKCEVCEKRFITRQKLMEHHNVHTGRQPVKCTVCDDTFRRYSNMVQHRDRHHLAKRAKVRDYVCQCGAVFHSRAKLSWHKETHDERPKACLYCSDKFVHASSLTRHVRRTHNEYFLSKGAPGGKGENVPCPVCKQVYLRANLRAHVLTHSGARPHSCVVCNKSFTTKWNLKLHRWTHLSRSAKPFRCSVPACAGAFIRHSEFVAHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCKVQECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVRIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281692;
- 90% Identity
- iTF_00281692;
- 80% Identity
- -