Cspo037940.2
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751353.1:4326338-4341550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 1.6e+02 4.4 0.0 3 23 200 221 199 221 0.93 2 17 0.19 22 7.1 0.0 2 23 247 269 246 269 0.91 3 17 0.00018 0.021 16.6 1.7 1 23 291 313 291 313 0.97 4 17 0.0013 0.16 13.9 0.1 1 23 317 340 317 340 0.98 5 17 0.028 3.3 9.7 0.5 2 22 346 366 345 366 0.94 6 17 0.01 1.2 11.1 1.8 1 23 373 396 373 396 0.96 7 17 0.15 18 7.4 2.0 1 23 403 426 403 426 0.94 8 17 0.0051 0.6 12.0 0.8 3 23 433 453 432 453 0.97 9 17 9.9 1.2e+03 1.7 0.7 2 23 491 513 490 513 0.93 10 17 0.39 46 6.1 0.1 2 19 585 602 584 604 0.94 11 17 9.8e-07 0.00012 23.7 0.6 1 23 610 633 610 633 0.94 12 17 2.8 3.3e+02 3.4 0.1 5 20 641 656 638 658 0.86 13 17 1 1.2e+02 4.8 0.5 1 23 665 688 665 688 0.88 14 17 0.00023 0.027 16.3 0.6 1 23 697 720 697 720 0.95 15 17 0.00019 0.022 16.5 0.1 1 23 725 747 725 747 0.96 16 17 5.9e-05 0.0069 18.1 2.5 1 20 753 772 753 775 0.94 17 17 0.0094 1.1 11.2 1.1 6 23 786 804 781 804 0.93
Sequence Information
- Coding Sequence
- ATGAATGGGTCCAGGGGCGAGGGACTTGGGGAAGTCCCCGCCCCCTATTCGATGGACCCGAGTCGCAGGCGCGCGCGAGTTAAAGCGCGCGCCTCTGAGGCGATGCACGGGGTAGTTCAACACCTCACTACCCCGCGCAGGAGACGAGGCCCGGACAGACCGGCCAGCAATATGAACTTGGACCCTATGGAATCTGATGTGAAATTGGAAAGGATTAAACTGGAGAAGCGGCTTAGCGACGATGACTTCGATGACCGCGACTTCGATGACGATGACGACGATGATGATTTGGACGACGAACCTCTAACAAAACTGGCAAGCAAAATCCCCAAAAAGGAAACAGTGGACTTAATGGACCTTTTAGACAACACTAAGGCAGCTGAGAAACGGAAATCGAGCACTAAAACTAAGGCATCTCCCGCCAAAAAGGCAAAAATCGTCAAGAAAGAGCCGCCCAAAGCGACCGTCAGTAAAGTGCCACCTAAAacagagaaaaagaaaaaagccGAAAGTTGTGATGCGACGCGCGCTAACGCAGAAGCTATAATCAGTTGTACGACAGCTTATCCGTTCAGAGTGAACGATAAGTCGATACTGTGCGTCTACTGCCAGGAACTTTACGAAGACCCTGATGTGTTCCGACAGCATATGGACGCGGAACATGATTACTTCAGCATAAAAGTTGCGTTTCATCACCTACCTAAAAATGAATTCATTAAGGCAGACTTGACGAACTTAAGATGCCGAATATGCAAGCAACCTTTTGAGGATTTGGACGCAGTTTTGGCGCATGTTGGCAAAGAGCATGATAAGAAAATTAACACGAAAGGCAAGCTAGGAGTCATGCCTTATTATCTGCAGAAGGATGTCTTCAATTGTGCTGTCTGCGAGAAGAATTTTCCATCTCTGTTCCACCTCAACAGACACACGATTACGCATTTCTTGAGCTACGTCTGTGATGTTTGCGGCAGCAGCTATGTGGCAACCACTGGTCTTCTGCGACACATGCGTTCAAAACACCAAAGTTACGAAGTATCTTGCAAGAGATGCAAGAAAGTCTTCCCAACAATGGAAGCGAAAGAAAAGCACACGCGAACCGAGAAGTCTTGCATGCCGTATTGCTGTCCTAAATGTCAAGAGAGATTCCTAGATTGGAAGTCGAGGAAAAGACATATGGAAGTGGCACATGGGCAGTCTAAGAGGACGTATAGATGTGCTGACTGCAACGTGGACTTTACGCATGAGAATGCGTATTATGAGCATTTTAAACTGCGGCATTCTGATGACTGCGCGGCTTGCAAGTATTGTGGTGTGAAGTTCTTGTCTCTATACCGATTGAAGAGACATATGGCTAAGCACGCTCATTTATTTACCAGTGAGTTCGATCCGTTGGTCGAAGCGCGACAAAACGCTAAGGTAGTGTTGAGATACTCAACGGCGTATCCGTTCAGGATCCCCGCCAATGATATGGTGTGCGTGTACTGCTGCGAGCCCTTCGAGGAGCCACGGAGGTACAGGGAACACATGACCCGCGACCATAGCTCGTTCAACGTCGACACAGCATTCGCGCACACCGTCAGCGCAGAAGAATACATCAAAGTCGATTGCACGGAGCTGCAGTGTCGGATATGTTCGAAATTACTTGACAGTATTACCTCTGTGGCCGAACATTTGCATCTAGAACACGACAAAAAAATTAACCTCAATGCCGAAGTAGGGCTGCAGGTTTTCAAGCTCGGCCAAGAGCGCTGGGTATGCGCGGTCTGTTCGCTAAAATTCCCGTCTCTAAGAGCTCTCAGCAGACACAACAGCTGTCACTACCACAAATACACTTGCGAGACCTGTGGCAAGTCTTATATCAGTAAGGAGAACTTAAACAAGCACATTCTGTTCGGCCATTCGCAGGAGAAAATTTGCATCAAGTGCCGAAAATCGTTTCCGAATAGCGAAGCTCGGCGATTGCATGTTTTGGCCACTAGACGGTGCTGGCCGTTCGCTTGTAACCTATGCGGCGATCGTTTCGTGTCCAGAAAGCTCAAATTCGCTCACAAAAGCGAAGTCCACAGTGTGGGTAATCCAAAAAAGTGTCATACTTGTCCCGAATGCGAAAGATCTTTTGACGAATGGAGACAGTATAGAGCTCACTACATTATTTCTCATACAGATATGAACTATGTCTGTCCGTTTTGCGGTATTAAATTCGATAATAAAGGGGGTCTAGAGAGCCATAAGGTCATCCATACTAAGGAAAAGTTATTCCATTGTACGGTTTGTTCGAAGTCGTTTGTAAGGAAGAAGAATCTGTCTCAGCACATGTGGATCCATAGCGAACATAAAAGGTTCCAATGCATACCATGCAACAAACAGTTTAATCAGAGAGTCAGTTGGAAAACGCATATGAGATCGTACCATCCTGAGTTGGTCGATTTTTGA
- Protein Sequence
- MNGSRGEGLGEVPAPYSMDPSRRRARVKARASEAMHGVVQHLTTPRRRRGPDRPASNMNLDPMESDVKLERIKLEKRLSDDDFDDRDFDDDDDDDDLDDEPLTKLASKIPKKETVDLMDLLDNTKAAEKRKSSTKTKASPAKKAKIVKKEPPKATVSKVPPKTEKKKKAESCDATRANAEAIISCTTAYPFRVNDKSILCVYCQELYEDPDVFRQHMDAEHDYFSIKVAFHHLPKNEFIKADLTNLRCRICKQPFEDLDAVLAHVGKEHDKKINTKGKLGVMPYYLQKDVFNCAVCEKNFPSLFHLNRHTITHFLSYVCDVCGSSYVATTGLLRHMRSKHQSYEVSCKRCKKVFPTMEAKEKHTRTEKSCMPYCCPKCQERFLDWKSRKRHMEVAHGQSKRTYRCADCNVDFTHENAYYEHFKLRHSDDCAACKYCGVKFLSLYRLKRHMAKHAHLFTSEFDPLVEARQNAKVVLRYSTAYPFRIPANDMVCVYCCEPFEEPRRYREHMTRDHSSFNVDTAFAHTVSAEEYIKVDCTELQCRICSKLLDSITSVAEHLHLEHDKKINLNAEVGLQVFKLGQERWVCAVCSLKFPSLRALSRHNSCHYHKYTCETCGKSYISKENLNKHILFGHSQEKICIKCRKSFPNSEARRLHVLATRRCWPFACNLCGDRFVSRKLKFAHKSEVHSVGNPKKCHTCPECERSFDEWRQYRAHYIISHTDMNYVCPFCGIKFDNKGGLESHKVIHTKEKLFHCTVCSKSFVRKKNLSQHMWIHSEHKRFQCIPCNKQFNQRVSWKTHMRSYHPELVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909099;
- 90% Identity
- iTF_01152425;
- 80% Identity
- -