Cspo036366.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751351.1:14968568-15007748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3 3.5e+02 3.3 0.2 1 23 508 530 508 530 0.95 2 11 0.0039 0.46 12.4 0.6 3 23 545 565 543 565 0.94 3 11 0.0028 0.32 12.9 6.0 1 23 571 593 571 593 0.99 4 11 1.6e-05 0.0018 19.9 2.4 1 23 600 622 600 622 0.99 5 11 5.1e-06 0.0006 21.5 0.4 1 23 628 650 628 650 0.93 6 11 1.7e-08 2e-06 29.2 0.2 1 23 656 678 656 678 0.98 7 11 4.6e-06 0.00054 21.6 1.3 1 23 684 707 684 707 0.96 8 11 0.002 0.23 13.3 5.8 1 23 713 736 713 736 0.96 9 11 2.4e-05 0.0028 19.4 0.9 2 23 743 764 742 764 0.97 10 11 1.4e-05 0.0017 20.0 1.0 1 23 770 792 770 792 0.97 11 11 0.0079 0.93 11.4 0.1 1 23 798 822 798 822 0.93
Sequence Information
- Coding Sequence
- ATGCTTATTGGAATTAAAAATCTTGCTGAAAACctgAACACATTACAATCGGGTAAGAAACTATCGGAGGTCGTAAGCGATATCCTGGACAAGCCGATACAAGAGAACAAAGTACACACAAGCGTGATATGCAAGAAGTGCTACAAGGCATGCTCTGAATACGATTTAATTGAAACGAGGTTACAAAAAGTAAAAGATGAGCTTGTGGGGCAATTTAAAGAATCTTTGTCCAACCTCAAACTTGATTACGACAACTATGAACGAAGTGTCTGCGAGAAGACCACGATGCCACCACCGGCGCCAAAGCCAATACTTCTGGGCAAGAAACTCGTGGTCCCAGCATCTAAACTGCAGCCCATCACACCGGAGCTACTCCTCAAAGTGGGCAAGCTACCTGCACTGTCCAAGAACAGCATGATTTTACCACAAATGAAGCCAGCAACAGCCTCAAAATTAAACCTAAAAGTAACAGTCGGCAGTTCAGTCTTAACACAAACGATAATAACCACAACGAATACAAAACCAGCAGACAAGCAAACATCCAACATAGACACGAACATCCTAACATCACTAACAAACTCATTGAAAGATGACATAGACAATTTGGTTACACCCCAAAGTCATATAACGCCAAAAACATCCATTTTGAATTTCAACGTGAACAGTTTGCCGAGGAATTTTTTGTCGGAGGCGGTGTTGACAAAAGTTGAAGATGAagaaaatgatgatgatgataatgatgttCATGATATTggtgatgatgataatgatgatgtgaATAGTGATAGCGGTGAGCATGATAAAGGGAACGAAGATGAACAGTCTATGGAGATTGATGAAGATTGCTCACTATCCCTGATACCGGTCTCCTCGGCCGATAGCAGCAATAACTTAGTGCTAGAAGTGGAAGAAATGAAGAGCACCGCAAAGTCTGAAGTAAGCGAGTTCCTGAACGTAGAAGAACTACCATCGTTGGACCCCAATAACGAAGAACACAAGTACATTCTAGGCAAGCTGCAGATTCTTAACGAGGGAGAAGACGAAATCGATGAGGATGAAGAAGGACACACGATAGTGGTGAACAGTGAGAACGGCTCAATACTTCGAATGGTGTCTGGACAGAAGTTCATATACGAAGGCGGTGAGATATCGCTGGTGATGGCCGAAGATGATCAGCAACAAGATGACAACAACGATGATGAGCTTAATGATGAACAAGATTCGAATGACGAGACTGCGATAGAATTACAGATGGCAGGTGATGAAGAAACTGCTAAAGCTATTTTAGCGGCTGCTCAGGAacaagGTGGTGCCTTCATCAAAGTGGAGTCGGGTGAGATGTTCCGCGTGCAGACAGTCGACCGGCGCGACGATGCCCTCCCGCCGCTCGTGGCGCGGGAAGGGGACGGGTTCAAGTGCTTGCTCTGTGACAACGTTAAGAATGAGGAGAGCTGGCCCAGCGTGACGGGCGACGCAGAATCCATGATGCGGCACCTCAAACGCTTCCACGACGCACGCATCTACATCTGCCAGTTCTGCTCCGCCATCATGCGCAAGCGCACCGACTATACCGCGCATATAGCTGAACATGCTTCGAAACTAAAGACCGGCAGTAACCGTGCCTCTCACTTATGCACGTCGTGTGGCAAAACATTCGGTAGCAGAGCCCTGCTCCTAGAGCACGCTAACCTGCATGCAGGGCTTCGCCCCTACACCTGCGACCTGTGCCACAAGACCTTCGCCTCCAAGTACACGCATCAAGCACATCTGAAGACACATGCGaACCGCCCCCGTCCGTACAAGTGCAGTCAGTGTGGTAAATCGTTCCTAACTCAGCAGAATCTGACGCAGCATGAGAAAACACACTCAGGAGTTAAAGATTTCGTCTGTAATGTATGCAACAAAGCGTTCAGTACGCAACACAATCTGGAAGTCCACGGCGTGGTCCACTCCGGGAACAAAGCGTTCGTGTGTACCATCTGCGGGAAGGCCTTCGCGCGCCGAGCTGAGCTCAGGGACCATATGAGGACACACACAGgTGAACGTCCATTCCCATGCGACATATGCGGCGCGCGCTTCACTCAGCGGTCGAACCTGCACTCCCACAGACGTGCGACACATCTAGACGATAAACGATACCATTGTACGCAATGTCCGAAACAATTTAAAAGAAGAcgATTACTGGAATACCACATAAAGGCTTGTCACACGGGTGAGCGACCGCTCAAATGCAAAGTGTGTCCCGCTTCATTCGTGTACCCTGAACATTACAAGAAGCATCTACGTATACACAGTGGAGAACAGCCCTACGTGTGTgagATTTGCGGCAAATCATTCAACTCGCGCGACAACCGCAACACGCACCGCTTCATCCACAGCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGCGCCGGCTTCATGCGCAAACAGCTGCTCTACGCGCACATGAACACTAGCgGTCACTTAGCAGAATCAATAGTAGTCAATCAACCAAGGGTTATAAAAGTTACAGAAAATGGCGTGACTGTGCCAATAGAAAATGAGAGATCAGACTCGCAGTCTAGTGATAAATTCGACGCGataTTTGAAACGAATGAATTGGATCATAATGTCAAATCTGGTGATCAGATGGACAACTGGACTAGTGATGAAATAGATGGATGGATAAACTTATATAGAGAAAAGGAAGGAGAAACAGCGGATAAGGCGACAATAAGTCTAATGCAAGAAAGCGAAGATCCCACATTGTTAACTATCCATAACTTGGGAGAGAGGACTCAGAGTGCCATTTTAGAAGCTGTCAGTGCTGAGCAGTTAAATGAACAGGCCGAgatcGTAGCGAACGATGAAAATGGCGGCGTTGTACGACTGATACAAATCAAATTGCCCGACGGGAACAACGGCTGGGTGGCGCTGAACCGCTAA
- Protein Sequence
- MLIGIKNLAENLNTLQSGKKLSEVVSDILDKPIQENKVHTSVICKKCYKACSEYDLIETRLQKVKDELVGQFKESLSNLKLDYDNYERSVCEKTTMPPPAPKPILLGKKLVVPASKLQPITPELLLKVGKLPALSKNSMILPQMKPATASKLNLKVTVGSSVLTQTIITTTNTKPADKQTSNIDTNILTSLTNSLKDDIDNLVTPQSHITPKTSILNFNVNSLPRNFLSEAVLTKVEDEENDDDDNDVHDIGDDDNDDVNSDSGEHDKGNEDEQSMEIDEDCSLSLIPVSSADSSNNLVLEVEEMKSTAKSEVSEFLNVEELPSLDPNNEEHKYILGKLQILNEGEDEIDEDEEGHTIVVNSENGSILRMVSGQKFIYEGGEISLVMAEDDQQQDDNNDDELNDEQDSNDETAIELQMAGDEETAKAILAAAQEQGGAFIKVESGEMFRVQTVDRRDDALPPLVAREGDGFKCLLCDNVKNEESWPSVTGDAESMMRHLKRFHDARIYICQFCSAIMRKRTDYTAHIAEHASKLKTGSNRASHLCTSCGKTFGSRALLLEHANLHAGLRPYTCDLCHKTFASKYTHQAHLKTHANRPRPYKCSQCGKSFLTQQNLTQHEKTHSGVKDFVCNVCNKAFSTQHNLEVHGVVHSGNKAFVCTICGKAFARRAELRDHMRTHTGERPFPCDICGARFTQRSNLHSHRRATHLDDKRYHCTQCPKQFKRRRLLEYHIKACHTGERPLKCKVCPASFVYPEHYKKHLRIHSGEQPYVCEICGKSFNSRDNRNTHRFIHSDKKPYECVACGAGFMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENGVTVPIENERSDSQSSDKFDAIFETNELDHNVKSGDQMDNWTSDEIDGWINLYREKEGETADKATISLMQESEDPTLLTIHNLGERTQSAILEAVSAEQLNEQAEIVANDENGGVVRLIQIKLPDGNNGWVALNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -