Cspo034919.1
Basic Information
- Insect
- Catocala sponsa
- Gene Symbol
- -
- Assembly
- GCA_963564715.1
- Location
- OY751350.1:4660149-4665005[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 7.6e-05 23.7 0.0 1 41 15 55 15 59 0.91 2 2 6.4 2.8e+03 -0.5 0.0 22 36 553 567 552 574 0.84
Sequence Information
- Coding Sequence
- atgGTTAACaactataaaagaaaaactacCCAGGCGTCATGGGACGAAGATGTGATGGCTCGGGCAATTAAAGAGGTAAATGAAAAACACGGCTCGATTAAATTTATCTCAATAAAATACGGTATCCCTCGCACAACTCTAAGAAGGCATTTAAAAACAGGATCTGCCAGAAAGAAACTTGGCAGATTTACAACAGTATTTACTTTACAGCAGGAAGAAGAACTCTTAGAGTACTTGTTTCATATGGATACCCTCTTTTTTGGCCTCACGAAGGAAGATTTCCTGCAGCTTGTGTTTCAATATGCCGAAGCAAATAACATACCACATCCTTTTAAGAATGAAAGTGCCGGACACGatttttataaaggttttaTCGTGCGTCATCCTGATTTGACCTTGTGGCGCCCAGAACCCACATCTATAGCTAGAGCCCGGGGCTTCAACAGATCCCAAGTATATAGATTTTTTGATCTCCTTGAAGCTGAAATTGAGAAGCATCAAATTGACGCAATGCGTATCTATAACATGGATGAGACCGGTATACAAACATCTTCCAACAAACCTCCCAGAGTTTTAACCAAACTGGGTAAAAAGCAAGTGGGTCACATAGCCAGTACTGAGCGAGGAAGAACGACGACAGTCATTTGCTGTTGTAATGCTGCGGGATCCTTTATACCACCTTTAATGATTTTTGCAAGGAAAAGAATGGCACCGAACCTCCTAGATGGAGCGCCCCCGGGTACACAAGCAACTATCAGTGATAATGGGTGGACCAATGGCACTGTTTTTTTGGAGTGGCTTCGTTTTTTTATAGACACAGTCCGTCCGACAGCAGAGAAAAAAGTACTACTCGTCATGGACAATCACGAGTCACATAAGTACTTGCCAGCTTTAGAACTCGCCTCTAAGAATCATGTCATATTTGTATCACTGGCACCACACACTACACACCGAATGCAGCCATTAGATTTCTGCGTTTATGGGCcgctaaaaacatattttgagcGTAGTGTTGCAACATTTCAGAAAACTCACGTTAAAACTCAAAAATCAGGGTCGTCTGCTGATGATAACTACGTGTCAAATTTATGGTATTTTGACCTTTTGATGTTCACAGCAGATCAAGAAATGCCAAGAAATAGTATTTCAAGTGAAAGTATTGTGGATATAGATCAGAATGAAACATTTTTCGAAGATGATAATTCGCCGCGGTACTCGCCACTACCATCACATTCCCCACTATCATCACACTCGCCCTTGCCATCACACTCGCCCTTGCCCTCACACTCGCCCTTGCCCACACACTCGCCCTTGCCCACACACTCGCCCTTGCCCTCACACTCGTCGACCCAAATACGTGAAACAACGCCGTCAGCGTCGTCCAAAAAATCATCAGTAAATAAAAGGAAACGTACATTAATTAATGAAGCTTACAAAGCCTTAAAAGAAGATGATGAATATGATGGTATAGGGTTGAATGTGGCATGTAAGTTGCGACGTATGAATGAAGACCAAAGGTTATACGCAGaatcattaattaataaagtattattgtatGGTATCAAACAAAAGTTGCAAGAAGAAACTAATTTTACTGGTCTTGTGTCCACACAGCTCCAAATTGCACATACAGTTCCCTCATCACAGTCACCAACGGCAGCTCGAATATCTTCACTCCCAAGACCTACTATTTCAAACAGAGAACAAGCAATAATCTCGTCTTTTTCTCAATCTATATTACAAGAGTCTTCTGAGGAACTTCGAACTGTTCCCATTAACGATTGCCAACAGCCGTCACAGACAGCCATGATTAATCCTGACGATTACAATGAATCTGGAGAATTGTcgcagtttattattttaaaaaatttggaATAG
- Protein Sequence
- MVNNYKRKTTQASWDEDVMARAIKEVNEKHGSIKFISIKYGIPRTTLRRHLKTGSARKKLGRFTTVFTLQQEEELLEYLFHMDTLFFGLTKEDFLQLVFQYAEANNIPHPFKNESAGHDFYKGFIVRHPDLTLWRPEPTSIARARGFNRSQVYRFFDLLEAEIEKHQIDAMRIYNMDETGIQTSSNKPPRVLTKLGKKQVGHIASTERGRTTTVICCCNAAGSFIPPLMIFARKRMAPNLLDGAPPGTQATISDNGWTNGTVFLEWLRFFIDTVRPTAEKKVLLVMDNHESHKYLPALELASKNHVIFVSLAPHTTHRMQPLDFCVYGPLKTYFERSVATFQKTHVKTQKSGSSADDNYVSNLWYFDLLMFTADQEMPRNSISSESIVDIDQNETFFEDDNSPRYSPLPSHSPLSSHSPLPSHSPLPSHSPLPTHSPLPTHSPLPSHSSTQIRETTPSASSKKSSVNKRKRTLINEAYKALKEDDEYDGIGLNVACKLRRMNEDQRLYAESLINKVLLYGIKQKLQEETNFTGLVSTQLQIAHTVPSSQSPTAARISSLPRPTISNREQAIISSFSQSILQESSEELRTVPINDCQQPSQTAMINPDDYNESGELSQFIILKNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -