Basic Information

Gene Symbol
Segment-1
Assembly
GCA_963564715.1
Location
OY751346.1:4729072-4742856[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-10 2.2e-07 31.8 0.0 1 43 10 53 10 55 0.84

Sequence Information

Coding Sequence
ATGCCGAAGGCACCGAAAGTAAAATATACTCAGGAAAGCCTTCAGAAAGCCATCGCTGAAGTTCAAAATAATGAACAGCAATTGTCAGATCGGCAAATTGCACAAAAATATGGTGTTCCGAGATCCACGCTTAGGTTTTACAAACGTAACCCAGGACACAAAACCAGCCTGGGTCCTTCGACAATTTTAACTCCGAATGAGGAAGCTATTCTTGAAGAGTGGATTATAACTACAGCTCGAAAAGGATTTCcaaagaataaagaaaatataatagacaGCGTACATAAGTTTCTTGTGGAGAATCCAAGACCTAACCCATTTTCCAATAACAGGCCAGGCATTGGGTGGTGgaaagcttttttaaaaagacacccTAAATTAAGTATCAGGGCTTCTGAAGGTGTAACAAAAGCTAGCTCATGCGTGTCTGAGAAAGATATAAGAGGATGGTTTGATGAGATTCATGCGTATGCTGAAGAAAAAGGACTGACTGAGGTTCTCAACCAACCAAGTAGAGTTTTTAATGCAGACGAGACTAATTTTCAAATTTGCTTAAGTTCTGGACTTGTTGTGGCTGAGAAAGGatctaaaaatgtttataatattgaacACTCAAGCGCAAAAGAATCCATAACTGCCTTATTCACGTTTTCGGCTGCCGGTGACGTCTGCTGCCCATTTATTGTGTACCCGTATCAAAGACTACCTGAAAAGATATGCGAGTCTTTACCAGAAGGGTGGGGTATAGGTAAATCAGACAATGGTTGGATGACTACCGAAGTATTTTACGAATTCATCGCAAATGTTTTTCACCCTTACTTAGTAAAGAAGGCTGTTCAGTTCCCAGTCATCTTATATGTTGATGGtcataaaacacatttaaattatcatttaagCCAATTATGCACGCATCTTCAAATTGAGTTGATAGCTTTATACCCTAATGCAACGAGAATAATTCAGCCAGCTGACGTATCTGCTTTTAGACCCTTAAAAATAGGTTGGAGAAGATATTTAAAGAAATGGCAACTAACAAATCAAAATAAGGGCATAACAAAGCTAAATTTTGCTcctattttaaatacagttttaGAAGAAAGTCTACGACCAGAAATATTGGTAAATGGGTTCAGAGCATGTGGTCTGTGTCCGTTTAATGCAAATTCTATTGATTACTCTAAATGTTTAGGAAAAACTGCTGATTGCCAAAGAGATTTAGATAAAGATATTTCAGATAATGTCTCTATTACATACAAAACCTTTAAAGATATAACTGGAGCGTCTCTTTGCCAAAAATTTAAAGACCACTACTCTGATAGTACTCCCGTCAACCCGAGGGGAGTCTATCTAACGACCACAAAAATCGACGAGTCAAAGCCGTACCACAAAATAATGCTCGGAAGAGTCTCGGAAACTGCAACATTCGGTCTGATGAAGGCGTATGAGTGGTTTAGCCTTTTTGCGAGAATGGACCCCACCCTTCCCGAAGTTAGGGCAATAGCCGGATTGGTTCGGAAATCTTCCGGAATGCCTTTCAAGATAAAGAAGGCCGATAACTCCCAGGTAAGTGAAATTTCACTATTTTATAACATTCAAAACCTAGTAGAGTGTTTACTCAACATATCTATACTGCGGTTTGGATTAACGACGCGCATGCTCAAACTCGTTACCTCAGACGAGGTAGATGGGTATGTGACTCATCAAATATCGTTAGATGAGGTAATCGACGAGCTAGTGTATACATATGCCATTGATCCGAAGCATACGTGCAAAGCCATTCGAGGTTATCTAATCAGAGTGATCCGAACTTGCGGGGCTACGGCCTTTAAGCAGGTCACTTTCCAGCACGGTCCCCTCTCCTCTATGCCGAGAGATCACGTGGGCCCTCTCAAGCCTATCGAGTTCGTCGCGACCAAATTCTTTGCATCTTACTTAGAGTCATCGGTAATGAAAGACGGATTTGCGGAGGGCAAGGAAATATTGCATAAGCTTAAGATGTTTAAGCTACAAAGATTGTTAGAGCTCTATATGAAAACGAGCTTAGTCAAGACAGACCCTCGAGAGTTTGTGATATGTGGCTCCTTTCTCCAATCAATAATGGCCATAGCCGGGTACGGGAGGGGCCTGAAATTCGCCTCCTCCCCCCGCAGTGCCCTAGAATCAGACATCGACAAGCATGATCTCGCTACCAATATTGAAGAAATCATAGTGAATCTACACGAACAGGCAACTGATGCCGGATTCACACCTCCCACAGGGGAGAGATGGATACCCACGTGCATCGCGTCGCTAAAATCCACCTCCGCGGGTGTGGCCCCGATAACCGTGAATATGAGTATCCGGGGTACTGCACAGAATATCAAATTACGTAAGAAGGCCGCTATTGGAGTAATAATGGGAAAGACAGCTTTTGAAAGAAAAGAGTTAAGTAAAAAGACTGCGTTGGCCTCCCCAGGGAGCGTAGGGTATCGAGATGTACCCTATAAACCTACTCGTTCTATATATGTCGTTAGACTACCTACCCAATATGCTCAGATAGCTGTATGTTCACATCTCGTAAACTTTGTATCTAGTCGCGGGAAGAATAGGGCGCGGGTCGGGGCTCCCATTGACCCCTCCCACTTTATCACTGGTCCACATTCAACCACCGGAAGACGCCTGAACGATACATACGACACCATCGCCGCCTCGGGTGACATGACCATGCTCGCCCTTGGTGCCGATCTCTCCAGCTTCGATTCGAACTGCGTCTACTGGAATTTCAGACGGCCACTTATTACTGCCCTCGTGCGAGTCTTGAAAGGTGAAACTTTCGGACCTGACATGATATCAAGTGCTGAGATGATTCAGTTCGCTTACGGAGACGGCATCATTTACAATTCAATATGGGATAATGGGCGTGAACCTCTGGTATATCTAAATAATGATACTACCCCTGAAGAGCACCCCGAATTGAGAAAATATCTCGAGCTTATGACTGTTGAAGACCCGCCAGAAAGATTACCCTTAAAGCCTTTGCCTGGCGCCACACCTATGAAGCCCGGATCTTATTACGTTTTCAACATAGAAGCGTATCTCGCGACCGAGGAAGCTCCTATACCATGGGAAGCACTAAAACTGGGCGTCCGTCTAGACGGGAAGGACTTAATCAAACTGACGAGTGAGGCCTCTGGCGAACTCTCCACTTTGATGATGAATACGGTGGCAAACTTGGCCATGCAAAGGATTGCCATATCCATATTTAAGAATACCGCCTTTGGAAAGAAGTTTAAGCCGGTTTATATGAAAGGTGTCGGGGATGATTCTGAATGGATAGGACAGCTCCTACCGGGTGTATCTGCTTCTGAGATCGATGAGGCTCTTGCCACGTTATCCCAGGCTTATAAAGAGATGGGACATACATTGTCCGCAGAAAAGACATTTGTGATCCCGCTAAGCGGCGAGTTCATACAGACTTTCGCGCGCTTTGGTCTGATGATACCTAAAGACCAGATCATggttgaCTACTCTGATAGTACTCCCGTCAACCCGAGGGGAGTCTATCTAACGACCACAAAAATCGACGAGTCAAAGCCGTACCACAAAATAATGCTCGGAAGAGTCTCGGAAACTGCAACATTCGGTCTGATAAAGGCGTATGAGTGGTTTAGCCTTTTTGCGAGAATGGACCCCACCCTTCCCGAAGTTAGGGCAATAGCCGGATTGGTTCGGAAATCTTCCGGAATGCCTTTCAAGATAAAGAAGGCCGATAACTCCCAGGTAAGTGAAATTTCACTATTTTATAACATTCAAAACCTAGTAGAGTGTTTACTCAACATATCTATACTGCGGTTTGGATTAACGACGCGCATGCTCAAACTCGTTACCTCAGACGAGGTAGATGGGTATGTGACTCATCAAATATCGTTAGATGAGGTAATCGACGAGCTAGTGTATACATATGCCATTGATCCGAAGCATACGTGCAAAGCCATTCGAGGTTATCTAATCAGAGTGATCCGAACTTGCGGGGCTACGGCCTTTAAGCAGGTCACTTTCCAGCACGGTCCCCTCTCCTCTATGCCGAGAGATCACGTGGGCCCTCTCAAGCCTATCGAGTTCGTCGCGACCAAATTCTTTGCATCTTACTTAGAGTCATCGGTAATGAAAGACGGATTTGCGGAGGGCAAGGAAATATTGCATAAGCTTAAGATGTTTAAGCTACAAAGATTGTTAGAGCTCTATATGAAAACGAGCTTAGTCAAGACAGACCCTCGAGAGTTTGTGATATGTGGCTCCTTTCTCCAATCAATAATGGCCATAGCCGGGTACGGGAGGGGCCTGAAATTCGCCTCCTCCCCCCGCAGTGCCCTAGAATCAGACATCGACAAGCATGATCTCGCTACCAATATTGAAGAAATCATAGTGAATCTACACGAACAGGCAACTGATGCCGGATTCACACCTCCCACAGGGGAGAGATGGATACCCACGTGCATCGCGTCGCTAAAATCCACCTCCGCGGGTGTGGCCCCGATAACCGTGAATATGAGTATCCGGGGTACTGCACAGAATATCAAATTACGTAAGAAGGCCGCTATTGGAGTAATAATGGGAAAGACAGCTTTTGAAAGAAAAGAGTTAAGTAAAAAGACTGCGTTGGCCTCCCCAGGGAGCGTAGGGTATCGAGATGTACCCTATAAACCTACTCGTTCTATATATGTCGTTAGACTACCTACCCAATATGCTCAGATAGCTGTATGTTCACATCTCGTAAACTTTGTATCTAGTCGCGGGAAGAATAGGGCGCGGGTCGGGGCTCCCATTGACCCCTCCCACTTTATCACTGGTCCACATTCAACCACCGGAAGACGCCTGAACGATACATACGACACCATCGCCGCCTCGGGTGACATGACCATGCTCGCCCTTGGTGCCGATCTCTCCAGCTTCGATTCGAACTGCGTCTACTGGAATTTCAGACGGCCACTTATTACTGCCCTCGTGCGAGTCTTGAAAGGTGAAACTTTCGGACCTGACATGATATCAAGTGCTGAGATGATTCAGTTCGCTTACGGAGACGGCATCATTTACAATTCAATATGGGATAATGGGCGTGAACCTCTGGTATATCTAAATAATGATACTACCCCTGAAGAGCACCCCGAATTGAGAAAATATCTCGAGCTTATGACTGTTGAAGACCCGCCAGAAAGATTACCCTTAAAGCCTTTGCCTGGCGCCACACCTATGAAGCCCGGATCTTATTACGTTTTCAACATAGAAGCGTATCTCGCGACCGAGGAAGCTCCTATACCATGGGAAGCACTAAAACTGGGCGTCCGTCTAGACGGGAAGGACTTAATCAAACTGACGAGTGAGGCCTCTGGCGAACTCTCCACTTTGATGATGAATACGGTGGCAAACTTGGCCATGCAAAGGATTGCCATATCCATATTTAAGAATACCGCCTTTGGAAAGAAGTTTAAGCCGGTTTATATGAAAGGTGTCGGGGATGATTCTGAATGGATAGGACAGCTCCTACCGGGTGTATCTGCTTCTGAGATCGATGAGGCTCTTGCCACGTTATCCCAGGCTTATAAAGAGATGGGACATACATTGTCCGCAGAAAAGACATTTGTGATCCCGCTAAGCGGCGAGTTCATACAGACTTTCGCGCGCTTTGGTCTGATGATACCTAAAGACCAGATCATggttgaCCAATCTGAATCTGCTACCTTAACCACTATGATTGAGAGTCCAAAGttggttaaaataaaatcctccTTTGGAGAATACCTGGCATATCCAAAAACACCCATAAGGAAAGGAAAGCGTCAAATAGAGAGGCAACCGTTTGCTATAACATCAGATAGTTTTAAATTAGGACTGCAAAAAAAACAGTCTGACAAAGAAAATCTgttaaaagaaaaggaaaagaAGAAAATTGAGAGAGAGATGAAGAAGACTGAAAAGAGTAAGAAAGAACTAAGTAAGGGTAAAACCAAAGCTCAAAGTACAAAAGAAGTTATGACTAATTATGTTGAAAGGTCAGGATCCATCACAAGCCAAAGGAAAAAAAAGCAGATCAGGAACGATAATATGATCTTGGAAATCCAGATGGGATTAGTGTCTGGAAGTCTCTCAGTAGGCCACAAACACCTGAAACGGCTAATGAAGCAACCCTGCAAGAAGCAAATCGTAAATTCGGTGAATTTGTTGGCCAAGAACTTGACAACGTACCTGCGGTAA
Protein Sequence
MPKAPKVKYTQESLQKAIAEVQNNEQQLSDRQIAQKYGVPRSTLRFYKRNPGHKTSLGPSTILTPNEEAILEEWIITTARKGFPKNKENIIDSVHKFLVENPRPNPFSNNRPGIGWWKAFLKRHPKLSIRASEGVTKASSCVSEKDIRGWFDEIHAYAEEKGLTEVLNQPSRVFNADETNFQICLSSGLVVAEKGSKNVYNIEHSSAKESITALFTFSAAGDVCCPFIVYPYQRLPEKICESLPEGWGIGKSDNGWMTTEVFYEFIANVFHPYLVKKAVQFPVILYVDGHKTHLNYHLSQLCTHLQIELIALYPNATRIIQPADVSAFRPLKIGWRRYLKKWQLTNQNKGITKLNFAPILNTVLEESLRPEILVNGFRACGLCPFNANSIDYSKCLGKTADCQRDLDKDISDNVSITYKTFKDITGASLCQKFKDHYSDSTPVNPRGVYLTTTKIDESKPYHKIMLGRVSETATFGLMKAYEWFSLFARMDPTLPEVRAIAGLVRKSSGMPFKIKKADNSQVSEISLFYNIQNLVECLLNISILRFGLTTRMLKLVTSDEVDGYVTHQISLDEVIDELVYTYAIDPKHTCKAIRGYLIRVIRTCGATAFKQVTFQHGPLSSMPRDHVGPLKPIEFVATKFFASYLESSVMKDGFAEGKEILHKLKMFKLQRLLELYMKTSLVKTDPREFVICGSFLQSIMAIAGYGRGLKFASSPRSALESDIDKHDLATNIEEIIVNLHEQATDAGFTPPTGERWIPTCIASLKSTSAGVAPITVNMSIRGTAQNIKLRKKAAIGVIMGKTAFERKELSKKTALASPGSVGYRDVPYKPTRSIYVVRLPTQYAQIAVCSHLVNFVSSRGKNRARVGAPIDPSHFITGPHSTTGRRLNDTYDTIAASGDMTMLALGADLSSFDSNCVYWNFRRPLITALVRVLKGETFGPDMISSAEMIQFAYGDGIIYNSIWDNGREPLVYLNNDTTPEEHPELRKYLELMTVEDPPERLPLKPLPGATPMKPGSYYVFNIEAYLATEEAPIPWEALKLGVRLDGKDLIKLTSEASGELSTLMMNTVANLAMQRIAISIFKNTAFGKKFKPVYMKGVGDDSEWIGQLLPGVSASEIDEALATLSQAYKEMGHTLSAEKTFVIPLSGEFIQTFARFGLMIPKDQIMVDYSDSTPVNPRGVYLTTTKIDESKPYHKIMLGRVSETATFGLIKAYEWFSLFARMDPTLPEVRAIAGLVRKSSGMPFKIKKADNSQVSEISLFYNIQNLVECLLNISILRFGLTTRMLKLVTSDEVDGYVTHQISLDEVIDELVYTYAIDPKHTCKAIRGYLIRVIRTCGATAFKQVTFQHGPLSSMPRDHVGPLKPIEFVATKFFASYLESSVMKDGFAEGKEILHKLKMFKLQRLLELYMKTSLVKTDPREFVICGSFLQSIMAIAGYGRGLKFASSPRSALESDIDKHDLATNIEEIIVNLHEQATDAGFTPPTGERWIPTCIASLKSTSAGVAPITVNMSIRGTAQNIKLRKKAAIGVIMGKTAFERKELSKKTALASPGSVGYRDVPYKPTRSIYVVRLPTQYAQIAVCSHLVNFVSSRGKNRARVGAPIDPSHFITGPHSTTGRRLNDTYDTIAASGDMTMLALGADLSSFDSNCVYWNFRRPLITALVRVLKGETFGPDMISSAEMIQFAYGDGIIYNSIWDNGREPLVYLNNDTTPEEHPELRKYLELMTVEDPPERLPLKPLPGATPMKPGSYYVFNIEAYLATEEAPIPWEALKLGVRLDGKDLIKLTSEASGELSTLMMNTVANLAMQRIAISIFKNTAFGKKFKPVYMKGVGDDSEWIGQLLPGVSASEIDEALATLSQAYKEMGHTLSAEKTFVIPLSGEFIQTFARFGLMIPKDQIMVDQSESATLTTMIESPKLVKIKSSFGEYLAYPKTPIRKGKRQIERQPFAITSDSFKLGLQKKQSDKENLLKEKEKKKIEREMKKTEKSKKELSKGKTKAQSTKEVMTNYVERSGSITSQRKKKQIRNDNMILEIQMGLVSGSLSVGHKHLKRLMKQPCKKQIVNSVNLLAKNLTTYLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-