Basic Information

Gene Symbol
stc
Assembly
GCA_963675205.1
Location
OY776084.1:1464428-1486460[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 6.4e+04 -4.4 1.6 15 19 569 573 568 573 0.81
2 13 0.042 1.4e+03 1.2 1.2 2 10 601 609 601 609 0.93
3 13 4e-05 1.3 10.9 18.1 4 19 617 632 615 632 0.93
4 13 1.5e-06 0.048 15.5 12.0 1 19 668 686 668 686 0.92
5 13 0.0003 9.8 8.1 12.3 1 19 727 745 727 745 0.97
6 13 1.6e-05 0.52 12.2 10.7 1 19 786 808 786 808 0.86
7 13 2 6.4e+04 -5.4 2.2 6 10 838 842 838 842 0.94
8 13 0.0036 1.1e+02 4.7 7.4 1 11 848 858 848 859 0.95
9 13 0.12 4e+03 -0.3 0.5 4 10 863 869 862 869 0.91
10 13 6.2e-06 0.2 13.5 14.4 3 19 877 893 875 893 0.92
11 13 0.00031 9.9 8.1 9.2 9 18 939 948 937 949 0.92
12 13 4.1e-08 0.0013 20.4 14.0 1 17 985 1003 985 1009 0.83
13 13 6.3e-05 2 10.3 4.2 1 13 1015 1026 1015 1029 0.95

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAATACATACTCTTATAATAACCAGTACCAAGCCTGGAATGGCGACCCTAACTGCCAACAATATGTTAACCAAGCCTACTATGCTAACAGAGGAGACCCATCTAACCAGTATGTGAGCTTTAATGAGTTTCTATCACAGATGCAAGGCAGCAGCAGTGGCAACGTCGCTAACGTTGCCAACTATAGCAATGTCCAGTATGAGAACTACCCCACAAGACAATACAATTATCAAAATGTACCTTCAACCTCACAAAATCCTCAAGCAAATAGTTATGGTTATGCTGCCACCTCATCAAATGCACCTAATGGTGCTGAAGCCTATCAAATGAATGTACAAAGTCAGTACAATACAGCCTTACCTGATCCTAATGCTTATGCAAATGATATGATTTTCAAGTCTAATCTAACTCCAACAGCAACTGAGTTTGTGCCAAAAGGTTCTGTGAAACCTTCTACTAGCTCTCAGAACATTcccaaacaagaagcaaagtcTCAAAATGGAGGAAATGAAACTAgaactaattataatagaaCAAATGAATCTAGgaaccattataataatataaatgagtcTAGAAATACTCATGGCAGCTCATCAGATGCTAACTGGAGAGAAAGACCCCAGATCTCACAGCAAAATAACGATACTATTAGGTCTGAATCTAACCTCATTCCACAAGAAGCTCAGAGAAGCCAAGAACCAAATGGTCGAAACCGTAATCGCAATAATGATTCCAATCGCAGACAGTATGAGAAAAATAAACGCTACCAGGAATCTATGGATCAAGTCTATGAATCTAGTAACCAGGAAACAAATAGCCAACAGCCTACTGAAAAAAGCTCTCAAGAACCTAGCAGTCGACAACAAAATGCAAGTAGTCATAACTCAGATGCTAACCAATATTACGATTCAAGTAGCCGCAATCAAGAATCAAATGATCAATATCaagattcaaataattatagCCAAGATTCAAATAGCCGTCACTATGATTCTGTCAGCCGAAACCAAGAACCAAATAGTCGTAATCAAGAATCAAATAGGGCGCAAGAGTCAAACAGTTACAATGAGCCAAGCAATCGCAGCCAACAATCAAACGGTCGGTACAATGAATCTGGCTACCGTAACTCTGACTCCAATAATCGGAACTATGATTCGACTCGTTATGACTCTAGTAACAAAAGGGgccaaaataaagtaaattataagtCAAAGAATAAGGATCCAGACAACAGAACATTCTATAACAGTGCAATGGGTAAAGAACCCCAGGATGTGAGGGCTTCTAGAGGGGAAGGGTCTGGACGTTATAAAAGCTATGCCGGTAGTCAGAGACTGCGAGCAGCAGAACGTAATTGTCCGGAAGATGAGCAATATGCAAACACATACTTGCATCCGAAAGAGGAGAAAATGGAACGGGAGAGAGAGAGAAAAGAGAAGACAGAACATGTTCCAAGTCCAAACCGATTTAGAAAGCAACATGCTAACAATGATCAAGttcacATAGAAATGACGCAACGCGAGCGTCTTTCGGAACAGCTAGACAAAGGTACGCTGGAGTGCCTGGTGTGCTGCGAGCGAGTGAAGCAGACGGAGCCGGTGTGGTCGTGCAGCAACTGCTACCACGTGCTGCATCTGCGCTGCATCCGCAAGTGGGCTATGAGTAGCATGGTTGAGGGAAAATGGCGGTGCCCAGCATGCCAGAACACGAACGAGGCGATCCCAACGGAGTACCGCTGCATGTGCGGCGCGATGCGCGGGCCCGAGTAccagcgcggcgcggcgggcgcgcacACGTGCGGGCGCGCGTGCCGGCGGCCGCGCGCCTGCCCGCACCCCTGCACGCTGCTGTGCCACCCCGGGCCCTGCCCGCCGTGCCAGGCGACTGTCACCAAACAATGCGGCTGCGGTGCAGAGACCCGTTCGGTGTTATGCAGCAGCAAGTTGCCGCAGGTCTGCGGGCGCGTATGCAAGCGCACGCTCGAGTGCAACGTGCACACATGCACTAAGGACTGCCACGAGGGACCCTGCGATACTTGCAGCGAGACCGTCACGCAAGTATGCTACTGCCCCGCGGCGAAATCCCGGTCGGTGGCATGCACGCTGTCGTCAGGGTCTGCGGTGGCGTGGGGCTGCGGCGGCGAGTGTGGGCGCGTGCTGGCGTGCGGCGCTCACGTGTGCCGCGCGCCCTGCCACCCGCCGCCCTGCGCCGCCTGCCGCCTGCTGCCAGACAATGTGCTCACTTGCCCCTGTGGAAAGACCAAGCTGGCACCAGACTCGCGCAAGTCATGCACGGATCCCATCCCGCTGTGTGGCAACATCTGCGCCAAGCCCCTACCTTGCGGCCCGGCCGGGGATAAACACTTCTGCAAACTTGACTGCCATGAAGGTCCTTGCCCAGTGTGTTCTGATAAGACAGTTCTGCAGTGTCGTTGTGGACACTCGAGCCGCGAGGTGCCATGCGCTGACCTACCACAGATGTACAACAACGTTCTGTGCCAGAAGAAGTGCAATAAGAAGCTGTCGTGCGGGCGCCACCGCTGCCGCACGGTGTGCTGCGCGGCGGCGTCGCACCGCTGCGCCGCGGCGTGCGCGCGCACGCTGGCGTGCCAGGCGCACCGCTGCGAGGAGTTCTGCCACACGGGCCACTGCGCGCCCTGCCCGCGCGTCAGTTTTGAAGAGCTAACTTGCGAGTGTGGAGCCGAAGTACTGCTGCCACCCATCCGCTGTGGCACCCGTCCTCCAGCCTGCAGCGCCCCTTGCATACGTGAGCGTCCGTGCAAACATCCCCCACATCACGCATGTCACTCCGGGGATTGTCCCCCATGCGTAGTGCTTACCACCAAAAGATGCCATGGCGATCACGAGGAGCGCAAGACGATACCGTGTTCACAAGAAGAGTTCTCATGCGGACTGCCGTGTGGCAAACCGCTGCCTTGCGGCAAGCATACCTGCATCAAGACCTGCCACAAAGGGCCCTGCGACACTGGCAAATGCACGCAGCCGTGCACGGAGAAGCGCAGTTCGTGTGGACATCCGTGCGCAGCGCCGTGCCACGTGGGCGCAGCGCCGGgctccgccgccgccgcctgcCCCAGCGCCGCGCCCTGCCGCCGCGCCGTGCGCGCCACGTGCCCGTGCCGCCGCCGCCACGCCGAGCGCGCCTGCTGCGACAACCAGCGCGACCTCGCCAAAATGATGAGCGCACTAGCAGCTACAAAAATCCAGGAGGGTGGTCAGGTCGATTTATCGGACGTACAACGCCCCGGCAATATGCTCAAGACATTGGAATGCGACGACGAGTGTCGAGTGGAAGCAAGAACCCGTCAGCTGGCCCTGGCGCTTCAGATCCGCAACCCGGACGTGTCGGCCAAGTTAGCGCCGCGCTACAGCGAGCACGTGCGCTCCACGGCCGCCAGGGAGCCCGCCTTTGCCCAACTCGTACACGACAAGCTCACCGAACTTGTGCAGCGAGCCAAAAAGTCTAAGCAGAAGACACGCGCGCACTCGTTCCCGTCAATGAACTGGCAGAAGCGACAGTTCATACACGAACTGTGTGAACACTTCGGCTGCGAGAGCGTCGCTTACGATGCTGAGCCTAACAGGAATGTCGTTGCTACCGCTGACAGGGAAAAGTCGTGGCTGCCAGCCATGAGTGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGCCGCGTGCCCGGGCCCGTGCTGCGCGCGCCGCCGGGCGCTGCGCCCTCGGCCTCCGCTGCCGCTCCGCAGACTCTCACCAAGTCCCCCAGCGGCTGGGCCACGCTCACGTCCACCAACGCGTGGGCGGCGCGCAGCAGCCTGCCCAGACCTGCGCCCGCCGCTGCGCCTGCGCAGCCGCCGCCACCCGTCGACAAGATCGACTACTTCGACAACCCACCCGACAATTAG
Protein Sequence
MSQWNNTYSYNNQYQAWNGDPNCQQYVNQAYYANRGDPSNQYVSFNEFLSQMQGSSSGNVANVANYSNVQYENYPTRQYNYQNVPSTSQNPQANSYGYAATSSNAPNGAEAYQMNVQSQYNTALPDPNAYANDMIFKSNLTPTATEFVPKGSVKPSTSSQNIPKQEAKSQNGGNETRTNYNRTNESRNHYNNINESRNTHGSSSDANWRERPQISQQNNDTIRSESNLIPQEAQRSQEPNGRNRNRNNDSNRRQYEKNKRYQESMDQVYESSNQETNSQQPTEKSSQEPSSRQQNASSHNSDANQYYDSSSRNQESNDQYQDSNNYSQDSNSRHYDSVSRNQEPNSRNQESNRAQESNSYNEPSNRSQQSNGRYNESGYRNSDSNNRNYDSTRYDSSNKRGQNKVNYKSKNKDPDNRTFYNSAMGKEPQDVRASRGEGSGRYKSYAGSQRLRAAERNCPEDEQYANTYLHPKEEKMERERERKEKTEHVPSPNRFRKQHANNDQVHIEMTQRERLSEQLDKGTLECLVCCERVKQTEPVWSCSNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAMRGPEYQRGAAGAHTCGRACRRPRACPHPCTLLCHPGPCPPCQATVTKQCGCGAETRSVLCSSKLPQVCGRVCKRTLECNVHTCTKDCHEGPCDTCSETVTQVCYCPAAKSRSVACTLSSGSAVAWGCGGECGRVLACGAHVCRAPCHPPPCAACRLLPDNVLTCPCGKTKLAPDSRKSCTDPIPLCGNICAKPLPCGPAGDKHFCKLDCHEGPCPVCSDKTVLQCRCGHSSREVPCADLPQMYNNVLCQKKCNKKLSCGRHRCRTVCCAAASHRCAAACARTLACQAHRCEEFCHTGHCAPCPRVSFEELTCECGAEVLLPPIRCGTRPPACSAPCIRERPCKHPPHHACHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCTEKRSSCGHPCAAPCHVGAAPGSAAAACPSAAPCRRAVRATCPCRRRHAERACCDNQRDLAKMMSALAATKIQEGGQVDLSDVQRPGNMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRSTAAREPAFAQLVHDKLTELVQRAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPGAAPSASAAAPQTLTKSPSGWATLTSTNAWAARSSLPRPAPAAAPAQPPPPVDKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00638338;
90% Identity
iTF_00283021;
80% Identity
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