Cnup056646.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776108.1:7308688-7330404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4 7e+02 2.8 0.8 1 22 258 279 258 280 0.71 2 12 0.0016 0.29 13.4 2.0 3 23 383 404 382 404 0.94 3 12 0.62 1.1e+02 5.3 0.9 2 23 467 488 466 488 0.96 4 12 0.82 1.4e+02 4.9 0.5 1 15 715 728 715 735 0.75 5 12 0.15 25 7.3 3.5 1 23 747 769 747 769 0.96 6 12 0.35 62 6.1 0.0 2 23 775 796 775 796 0.95 7 12 1.7 3e+02 3.9 4.3 5 23 889 907 887 907 0.93 8 12 1.2e-05 0.0021 20.2 1.0 2 23 923 944 922 944 0.97 9 12 1.4e-07 2.5e-05 26.2 2.7 1 23 950 972 950 972 0.98 10 12 0.00012 0.022 17.0 0.4 1 23 977 999 977 999 0.97 11 12 0.00019 0.034 16.3 0.8 2 23 1006 1028 1005 1028 0.96 12 12 0.0028 0.49 12.7 2.6 3 23 1067 1088 1066 1088 0.95
Sequence Information
- Coding Sequence
- ATGTCGGATTCCTCAAGGAAAAGGGCTAGAAAGTCCAAATTGGTGCCTCGGGAATACGTGGAAATCGATGAGGAGAATGTTACAAATTTGCAGATAGACCCATCAAACATATTACAACCTCTTCAGCCAATAAAAATTGAACCGGAGAATACATCTATAAATCAGAATGCATGCACAACAGCCACAGAGACTGATCACCTTCCCAATGATGATTTTGAAGCACTGATCGATAATGAGACAAGACAATCTGTAACTAAGGAACCCTCAAGAGAATTCTCTATAACAATAGCTGTTGAAGAATATGATGAAAACAGTAACGATTTAGTGATAGATGAATGTTACAAAGAAGAGCAACATACAGATGATGAAACAACCAAAGACTCTGTATTCTTTGCAAGTAAGTCACCAGCTATTCTCGAAGAAAGTAAAGATACGATAAACcgtgttatattaaataaaactagaccTACTGCTAATACAACCAGGACACGAGCACTTGCTGAAGCAAGTAAATACTCGGCTATTGAATTCAATAAATTGGTAGAACCATACATATTGGATCGAGAAGAAATTTTGGatactacaaatattatactGATTGAGTCACCTAACATCGCTGATAGATTATTGGCTATTGAAGTTAAAAATTGTATGGGACATTTTCAACGATACACCAATAGTACATTTGAAGATAAGATACAGAAAGTCTTGGAACAATGGCAGGATTGGCAGAAGTTATTACATCCGAAGTACAGAAGCTCACCGCTGTTctacaaatgttatatatgtaagaAGTCATGGTGGTACTTGTCGGGATTTTCTGATCACCTGAAAGAGCACGATGAGTTCAAGCTTGACTTGGAAGAGTACACATTGTATGAAGCTAATGTTATTGCATATAATACAGTCGATGAAATCATGGACGTGAAACAGTTTGCAACAGAAGGTGACTGTCCAAAATGTGGTAATACATACTCTCTACATAAGAAAGAGAATAGACAGTCAAACGATCATTATGCCTGCAGAGTATCACACTGTATAAAAACTTTCCAAACATGCTTCCTTTTAAAATTCCATGAACATACTGGTCACACTTTCTCAGAGCTAACTGGTATTGTTTTAACAGCGTTGCAAAGGAAGAAAAACTGTTCAGTATGCGGTTTAGTCTTCCATACTCAAACACATTATCAAGAACATATGATTTTAATGCACAGTGTACGGTCAGATTTAGTTGTAGCGGTCACATATAAGATGTGTAATTTGTGCCAGTCAAAATATGTGATCCGTGGTTCACATGACTGTCCGAATAAAGGTATTACAATGCAATGCAAGTGTTGTTTCAGAATATTCATGCCAGGTTTACGGTACAATTCACATCAGGATATAAAAATGAGTACTACATGTAAGATTTGTAATGAGACAATACCTCAATGGTGTATGGAAACGGAGCATATGATGACACATACGGATAATTTTGTGCTTGTGAAGAAATGTATATTGTGCAACAATTTCACAGTGTTTTTGGATGATGCAGCCGCTGCGAAGCATGAATATACTGAACACATAAAGAATCATTATGATACAACGCCTAAAACAGTGCTCAGATATTTTGATAAGatattggtgccaaaatCGTGTATCCCATTGAGAGCAATTGCAGTTAAAGaggAAAGAATGGAAGTCCCCTTAGCTCCCGAATTAGTGATAAAGCAAGAAGTAATAGACAGTTTAACTAACACAGGTAATGCAAACACAAATAACACAGAAGACAACGCAATAGCTATAAAGGAAGAAATAACCTACGAGACGCACTTAGATCCAGACAAGATGCAAGAAACCTACTCCATCAAAATTGAAGAACCAAACGAGCATTCCAGTATATTTGGGATTAAAATCGAACCCCAGGATATCGTGAAGCAAGAAACGCCAGACCAAGAATCGGAATACGAGGACGATATTATAAGGCTAGACGCTAACTTCGAATCTTCACAAGAAAGCACACAAGACAGCGTACAAGAAATCGTACAAGAAACCACATCAGAAATCATAGTCATTGACGATGATGACGACATGCAAGACATGGAAGAAGATATGCAAGACATGCAAGAAGATGAAGAATTACTTCGGAGACTGCCGAACATGTACCGGTGTAGCAAATGTGGTTACACAGCCCCGCATAAGGACTACAAAATCCATATTTTATCTGAATGCAGTCCAACCGTTGAAAATAAAGGCAGCTATAATTGCACCAAATGCAATACAAACTTCAAATCGATGAGGAAATATATAGATCATTTCATCAAGCACGGTCTCGTAAAGAACTCTTGCCCGGTCTGTTTCAAAGTATATGATTGGCCAACAGCATTACTTGCACATGTATCCATGCATATAAGAACAAGATTTGTAGCGGTGAGAACGATTACTCTGTATTATGAGATTTGCTCGGAGTACAAGTTTGAATGCAAGTTATGTAAAGAGCATGTTGTTAAGCCGGAGTTCTTTGAACATTGGGAGAAACATTTGACTATTGTGGAGGGGAAGAAAGGAGTGGCAGAGTGGGCGGCTAAAAGTGATGTTACGAGGCCAATTGGTGAAACCTTGGTGCAGAAGTTATTAAGTCATTTACAATCCCTGGAACTGGACAAATTGCGTTCGGGATGCATTATATGCCACAAGTATTTCTCAAGACGGAATGACTGCAAACGGCATATCATAgaacatttattaaatgatGCGTACCTCCACAAACCTAAATATGACTCATTGAAATGTCAGATATGTGATCGAGGGTTCCAGAAACCCGACAACTATAAGAAACATATGAGGGACCATGGGTCTCTACCGGTGTATAAATGTGAGATTTGTGACAAAAGTTTCAGTGATTCGAGtaattttacaaaacataaaaagttGCATAATAGTAATGCGTACACTTGTGATATATGTGGAAAGAAGTTTCAAGCAAAGTATTCTATTGAAAAGCATATGGTGATACACGAAACCCAAAAACCGATAACTTGCACGATATGCAATAAAGTTTTCTACCTTGCATCAGCGTTCAGAAAACATAATCGGATGCAGCATGATAAAAATGCACTGAAATTTGGATGTACAATATGTTCAACGAAATTTAGTTGTTTGAAAGACAAGTGGGAACATATGTGGCATATACATCAAGAGAGGAAGCACAAGGCGGACTGTCTGATCTGTTCCAAGTCGTTCCGGAGGTATATTGACTTGAAGCATCACTTCACTACTGAACACAAACTCGCTATGAAGAACGCTAAGaatgtgaaacaaaaaaatacatcacAGAATGTCTACGATATATTAAAGACTACTAAAATTGTTGGTATAGGCAGTAAAGAAGAAACCTTAATAGTTTATGAATGA
- Protein Sequence
- MSDSSRKRARKSKLVPREYVEIDEENVTNLQIDPSNILQPLQPIKIEPENTSINQNACTTATETDHLPNDDFEALIDNETRQSVTKEPSREFSITIAVEEYDENSNDLVIDECYKEEQHTDDETTKDSVFFASKSPAILEESKDTINRVILNKTRPTANTTRTRALAEASKYSAIEFNKLVEPYILDREEILDTTNIILIESPNIADRLLAIEVKNCMGHFQRYTNSTFEDKIQKVLEQWQDWQKLLHPKYRSSPLFYKCYICKKSWWYLSGFSDHLKEHDEFKLDLEEYTLYEANVIAYNTVDEIMDVKQFATEGDCPKCGNTYSLHKKENRQSNDHYACRVSHCIKTFQTCFLLKFHEHTGHTFSELTGIVLTALQRKKNCSVCGLVFHTQTHYQEHMILMHSVRSDLVVAVTYKMCNLCQSKYVIRGSHDCPNKGITMQCKCCFRIFMPGLRYNSHQDIKMSTTCKICNETIPQWCMETEHMMTHTDNFVLVKKCILCNNFTVFLDDAAAAKHEYTEHIKNHYDTTPKTVLRYFDKILVPKSCIPLRAIAVKEERMEVPLAPELVIKQEVIDSLTNTGNANTNNTEDNAIAIKEEITYETHLDPDKMQETYSIKIEEPNEHSSIFGIKIEPQDIVKQETPDQESEYEDDIIRLDANFESSQESTQDSVQEIVQETTSEIIVIDDDDDMQDMEEDMQDMQEDEELLRRLPNMYRCSKCGYTAPHKDYKIHILSECSPTVENKGSYNCTKCNTNFKSMRKYIDHFIKHGLVKNSCPVCFKVYDWPTALLAHVSMHIRTRFVAVRTITLYYEICSEYKFECKLCKEHVVKPEFFEHWEKHLTIVEGKKGVAEWAAKSDVTRPIGETLVQKLLSHLQSLELDKLRSGCIICHKYFSRRNDCKRHIIEHLLNDAYLHKPKYDSLKCQICDRGFQKPDNYKKHMRDHGSLPVYKCEICDKSFSDSSNFTKHKKLHNSNAYTCDICGKKFQAKYSIEKHMVIHETQKPITCTICNKVFYLASAFRKHNRMQHDKNALKFGCTICSTKFSCLKDKWEHMWHIHQERKHKADCLICSKSFRRYIDLKHHFTTEHKLAMKNAKNVKQKNTSQNVYDILKTTKIVGIGSKEETLIVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282953;
- 90% Identity
- iTF_00282953;
- 80% Identity
- -