Cnup056662.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776108.1:7622740-7653341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.081 14 8.1 1.1 1 23 280 302 280 302 0.98 2 9 0.16 28 7.2 0.0 1 23 309 331 309 331 0.95 3 9 0.00024 0.041 16.1 0.8 3 23 366 387 365 387 0.97 4 9 1.5e-05 0.0026 19.9 0.3 1 23 396 418 396 418 0.98 5 9 1.5e-05 0.0026 19.9 1.1 1 23 423 445 423 445 0.98 6 9 0.0011 0.19 14.0 0.4 1 22 454 475 454 479 0.92 7 9 0.00026 0.046 15.9 0.2 1 23 484 507 484 507 0.96 8 9 0.00014 0.025 16.8 2.1 1 23 513 535 513 535 0.98 9 9 2.7e-07 4.7e-05 25.4 1.8 2 21 545 564 545 565 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCATTCCTGTGTTTTATTTGCCATAATGCTGTTAACTCAGACACGACTGAAGAAACGCGGGATAAGTACCGAGAAATAGTCGGAATGAAcTTGTGTCCTGACTCTCACCTCTGCTTCATCTGTTGCCACATGGTCAATAAGCTGTGGCTGTTCAGATCTGTGTGTCTGAAAAGGAGTCTTGAGTATCCAGTACTGTTCAGTGAAAAATGTACAATGAACCTACACAGAAGCGATATTGAGactttaatattatgttctGAAGAAACGTGCATACCGACCAGCGCAACTCAATTATACTTTCGTTATAACAACGAGAACAGGGACAACAGTAACGATTACGTCGAACTAGAGGATGAATGCAACGATTTTAACGATTACTTTCCAGAAAAAACTGTAGATAACTACCAAGAAATTCTAGAAGGACCATACTCTGTTAAAGATAATTCTGATGTTGTAACAGAAGCTATTATAAGAGATGCACCGATAACGGAATACGGAAATGATTTAGTTGATGTCAACAATAGTTTTGAGTGCAACGATTTCGGAAATAACGATGTCGGTGATTTTGAGTTGGATAAAATGAGATTTGAGATTAAAATTGAAGATTTAGATGGGAATTATGTAGATTTGAATGATAACTGCGATGAAATTGGAAATGTTGGTGAATCAGAACAGTCCAAAAAGCCTTTAACTATTCCAGAAACTGCCAAAGACATTAACAATACCAAAACTAACGAGAAGAAAGACTTCGAAAAGATAATTCTCAGTCTAGAAGAACAGAAGACAGAGTTAGAAGGACACAGAAAGACAAAGAAGTACATAGAAGCTGAGTTCAAATGTTACAACTGCGCTTTGGGGTTTCTGTTTAAAGATTCTTATCAAGCACACATGATGAGGCATGAAGAGTCAAACGGCGAGTACGTATGCGTAGTATGCACGCTACGATTCGCGTCCGGCGCCGTGTTGCGCGCGCACCGCGCGGCGCACGCGCAGCGATACGTTTGCGCGCGCTGCGACGCGCGCGTGCGCAAGCGACAGCGCCACACGCACGCGCGCGCCTGTCACGGGAAGAGCGGCGACAGCGCCGCGTGTCACCTCTGTGGAAACGTGTTTCaAGACGCAAGCGGTCTACAACAACATTTGAAACGGTTCCATATGAGCAAAACCAGTAATCGAACCTATTCCTGCAGCGTCTGCGGCAAAAACTACAATAACCAAGCAGCCGTTAGGACTCATATGATaaagCATATTCAAAGAAAATTCTCATGCGACCAATGTCCTGCCAGCTTCAGCAGTCCTTACACGCTTACTCAACATAAGAAAAAACATACGAACAGTGCGACCGAGAAGGAACATATGTGTGTCTCTTGTGGTGTCGGGTATACGACCAGGAAGAGTCTTCTGGCACACATGAGGACTGCTCTACAGCATCAGGAAAGAGTATTCGAGTGTCCAATCTGTAGTCGAGTCTGCCCTAACTCGAGAGCCCTATCCCTCCACATAGCGCGGGTACACTCAACCACTAAGGAGTTCGAATGTCCTCGCTGTGACCACAAGTACACAAGCCGCAAAGGACTATTACGTCATGTCCGGGAACATACGTCACGCACGAAACCCAAGATGGCGCAATGTCATATCTGCGGGAAGAGTTTTAAGAGTAATAGCAAGTTGAACAGACATCTGCGAGAAGTATGCGGTAAAGAGAAATTGGAAGAAGAATTATCAGCTTATAATGACATTTTTCTGTCGGTTGATGCCAAATAA
- Protein Sequence
- MSSFLCFICHNAVNSDTTEETRDKYREIVGMNLCPDSHLCFICCHMVNKLWLFRSVCLKRSLEYPVLFSEKCTMNLHRSDIETLILCSEETCIPTSATQLYFRYNNENRDNSNDYVELEDECNDFNDYFPEKTVDNYQEILEGPYSVKDNSDVVTEAIIRDAPITEYGNDLVDVNNSFECNDFGNNDVGDFELDKMRFEIKIEDLDGNYVDLNDNCDEIGNVGESEQSKKPLTIPETAKDINNTKTNEKKDFEKIILSLEEQKTELEGHRKTKKYIEAEFKCYNCALGFLFKDSYQAHMMRHEESNGEYVCVVCTLRFASGAVLRAHRAAHAQRYVCARCDARVRKRQRHTHARACHGKSGDSAACHLCGNVFQDASGLQQHLKRFHMSKTSNRTYSCSVCGKNYNNQAAVRTHMIKHIQRKFSCDQCPASFSSPYTLTQHKKKHTNSATEKEHMCVSCGVGYTTRKSLLAHMRTALQHQERVFECPICSRVCPNSRALSLHIARVHSTTKEFECPRCDHKYTSRKGLLRHVREHTSRTKPKMAQCHICGKSFKSNSKLNRHLREVCGKEKLEEELSAYNDIFLSVDAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282696;
- 90% Identity
- iTF_00282696;
- 80% Identity
- -