Cnup053640.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- ZNF280A
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:13042205-13047872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.43 75 5.8 0.1 3 23 232 253 230 253 0.94 2 10 0.0066 1.2 11.5 0.4 2 23 279 301 278 301 0.95 3 10 0.016 2.9 10.3 0.5 2 23 325 346 324 346 0.95 4 10 2.4e-06 0.00042 22.4 1.8 1 23 350 372 350 372 0.98 5 10 0.092 16 7.9 1.4 1 13 377 389 377 390 0.91 6 10 2.2e-05 0.0039 19.3 1.0 2 23 409 431 408 431 0.95 7 10 4.2e-07 7.4e-05 24.7 1.4 1 23 438 461 438 461 0.98 8 10 0.011 1.9 10.8 0.4 1 23 467 489 467 489 0.96 9 10 6.2e-07 0.00011 24.2 1.3 1 23 495 517 495 517 0.99 10 10 6.6e-05 0.012 17.8 1.5 1 23 523 546 523 546 0.97
Sequence Information
- Coding Sequence
- ATGTTTAATGGAAATCCTTGCCGTTGCTGCCTCGTGCGGCCCCCGGATAAGGACCTGAAATCGCCGTACACAAGACTCGGCAAATCGGAAGTTTACTCGGATATGCTGAAAGATTGCTTTGAAATTCACATATCAGTAGAGTCCAGTGATGAGGATGGTGGCATATGTGAGATTTGCATCATGCGGTTGCGTGATGCGGTCGACTTCAAGCACCAAGTACAGCGCTGCCAGAAAGACTTTCAAGCTAAATTGCACAGTGTGAAAGATGAGTCTCCAAAGGTGAAAGAGGAACTGGCAGACTTAGATGAAGAGAATGGAATTTATTTCTTAGAAATAAAAGATGAAGTATCAGACTTCGAGGACGATGTGTTGAAGGATGATGACGAGGACGACAAGAAGTTGGCCGAAGTGTTCGGCTTCAACAACGTCACCATCAAGAAGTTTAATGAGAAGCGCACCAAGAAACGGTTACTGGATAAAGGCAGCTCGGATCGCAAATCAAAAAAACAACTCGCTCGTCCTATGAAGATATCACTGCGCACTCTCTCTCAAATGAACAAGTTTCTGAACCCGACGAAAGTGACTCCCTCTCGGCTCGTTAGCGACAACACTAAGCACAAGGTTAACATCGAGAATCTGCTCAAACACTCCAATTGCACGCCGTTCTTGAACAAAACTCTGTCAGGTATCATCTGCGCCTACTGCAAAGAAACGCACCCCGATTTGCCCCTACTCCGCAAACACATCGAATCTGTCCACATCAACGACAGCCTAATAGACAAGAAACGCATGGACAAAAGCAACTTATCCatcaaaattgacataaccgACCTCAAGTGCAACATCTGTCAAACGAAAACTGACGTCAtcggtaatttaaaaaaacatttgatCAAAGAGCACGACATTAAGTTTTATCCCGACATTAACGATTACGTTCTAGAATTTAAACTTACGGACGGTGAAATTTTAAACTGTGCATTATGTAATTCTACCTTCGAGACGTTTAAAATGTTGTTACAGCATATGAATGGGCATTATAGGAATTATATTTGTGAGATATGCGACTTAGGGTttataaataagcataagttaagAAATCATCAGCGTACACACGATATTGGAACTTTTAATTGTTCGTTTTGTGACAAAGTCTTCAGTACAAGAGTTAGGAAGTTATGCCATGAGAAGTATACTCATAACTCCGGTGCGAGGTACACGACCAGCTGTCCACACTGCGATGAGTCTTTCACGAGTTATTATCAACGGAACAGACATATGGCTGTAGCTCACAACGCCGCCGCGGCGACCTATAAATGCAATATATGTGACAagtcttttatactaaaatCGAAACTAACATCTCATATAAAAAAGGTGCATTTAATGGAACGTAATCACATCTGTGCCGAATGTGGACAAGGGTTCTTTATAAAGCAGTCTTTAGACGAACATATGATCAAGCATAATGGTGAAAGGATATATAAATGCACTGTTTGTAGCAAAGCTTACGCGAGGAAAAAAACGTTGAGGGAACATATGAGGATTCATAATAATGATAGACGTTTTAAATGTGGTCTTTGTCCTTTAGCGTTCGTACAAAAGTGTAGTTTGAAAAGTCATATGTTGTCAAACCACGGGGTTACTTTGGCCGAGTATGAAAGTAGTAGAAATGAGGCTGGTAGCCCTTGA
- Protein Sequence
- MFNGNPCRCCLVRPPDKDLKSPYTRLGKSEVYSDMLKDCFEIHISVESSDEDGGICEICIMRLRDAVDFKHQVQRCQKDFQAKLHSVKDESPKVKEELADLDEENGIYFLEIKDEVSDFEDDVLKDDDEDDKKLAEVFGFNNVTIKKFNEKRTKKRLLDKGSSDRKSKKQLARPMKISLRTLSQMNKFLNPTKVTPSRLVSDNTKHKVNIENLLKHSNCTPFLNKTLSGIICAYCKETHPDLPLLRKHIESVHINDSLIDKKRMDKSNLSIKIDITDLKCNICQTKTDVIGNLKKHLIKEHDIKFYPDINDYVLEFKLTDGEILNCALCNSTFETFKMLLQHMNGHYRNYICEICDLGFINKHKLRNHQRTHDIGTFNCSFCDKVFSTRVRKLCHEKYTHNSGARYTTSCPHCDESFTSYYQRNRHMAVAHNAAAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICAECGQGFFIKQSLDEHMIKHNGERIYKCTVCSKAYARKKTLREHMRIHNNDRRFKCGLCPLAFVQKCSLKSHMLSNHGVTLAEYESSRNEAGSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707230;
- 90% Identity
- iTF_00677911;
- 80% Identity
- -