Cnup054238.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:17591449-17592870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.014 2.5 10.5 0.5 1 23 161 184 161 184 0.94 2 10 0.063 11 8.5 0.3 2 23 210 231 209 231 0.96 3 10 0.022 3.9 9.9 0.3 1 23 253 275 253 275 0.97 4 10 4.9e-06 0.00086 21.4 0.3 1 23 279 301 279 301 0.99 5 10 0.0001 0.018 17.2 0.3 1 23 306 329 306 329 0.95 6 10 2.8e-05 0.005 19.0 0.5 2 23 336 358 336 358 0.97 7 10 5e-05 0.0087 18.2 1.2 1 23 365 388 365 388 0.98 8 10 0.0034 0.6 12.4 3.8 2 23 395 416 394 416 0.96 9 10 7e-07 0.00012 24.0 1.0 1 23 422 444 422 444 0.98 10 10 0.0015 0.27 13.5 0.0 3 23 449 470 448 470 0.94
Sequence Information
- Coding Sequence
- ATGCAGTTACAAGAAATACACAATCCATTTTTTCTTCTAGGAATCATTCAAGAATCCAATTCGACCATCACAGTGAAAGCAGAAGATGGTGAAGACATAAAACTGGTTTTACTCAAGCATCCAATATCATTAAACAGTTTAGAATACGAGGGCGTAACAGATACgagtaaaaaagaaaaccttCTACAAGTAACTCCAGTTAGACTTGGTAATGTGAAAAGATCAAATGAAGACCAAAATACTAAAGTAGGAAACTTATCTTTTTTGAAAGAACCAATTTCTTTGGATAACATTGAATGGCAGAATGAATCTAATGATATTCAAAAGTCAGTAACATTTAACGTGAAAACTGTGCCAGGATTTCTATATAAACCGGCGAGAAAAAGGacaaaaaatgttgaaaacCACTCTTGGAAACAAAATGCCCTGGCTATTTTCGAATACTCTTACGTTTATCCGTTCATACACGCTGGCAATAAGTACAAGTGTTTTATGTGTACAAAACCATTCCTAGACGCAAGACTGCTAAAAGAACACACTATAAATGAACATAGTATTAAAGAAATCAAACGAGAACTAAACAACCGAGTCAGAGATAAAACTCTTAAAGTAGATGTAACTTATTTGCAGTGTAGAATCTGTTTACAAACTGCACCAAACTTGCAGAACTTAAAAATGCACTTGAAGGATCATGGCAAGAAAATAGAACCGAATTTACAAGACAATATAATACCATTCAAACTGGGAGGCGAGAATTTTGATTGTCAGGTTTGCGGCGAACGCTATCTTAAACTTCGACTCCTAATCATTCATATGAGCAAACATTTCAACAACTATAGCTGTGAAATCTGCGGTTCTGTTTTTATATCACTCAATTTGCTTAAAAGGCATTTGCAGACACATGAATCCGGCAGTTTCCCTTGCGAAAAATGTGATAAAGTATTCAGCAATGCTGCTAAAAGGACTCTACACACACGAGGCGTGCATCAAAAACAGTTTCCACGGAGATGTCCGATTTGTCCCGAAAGATTCAACTCAAACTATCAGAGAACGAAACATTTACGCATAGTACATAATCAAACGACTGGATTGTTTAGATGTGATACTTGTGGACGAGAGTATGACTTGAAATATCATCTTTTGATACATATAAGATCTGTGCATCTACACGAAAGAAATCAAGAATGTCCCGTTTGTCACTCAAGGTTCTTctcaaagtattgtttgtcacGGCATATGGTTATACATACTGGTGAGAAGAATTTTAAATGCGACGTCTGTGGCAAGGCATACGCTAGAAGAAAGAATTTGAAAGAACATTCCAGATCTCATGAAGTTGGCCTGTGTTCCATATGTGGACAGAATTATGGTGATCAGAATAATTTGATCGCACACGTCAGCAATGTTCATGGAGCACTGtga
- Protein Sequence
- MQLQEIHNPFFLLGIIQESNSTITVKAEDGEDIKLVLLKHPISLNSLEYEGVTDTSKKENLLQVTPVRLGNVKRSNEDQNTKVGNLSFLKEPISLDNIEWQNESNDIQKSVTFNVKTVPGFLYKPARKRTKNVENHSWKQNALAIFEYSYVYPFIHAGNKYKCFMCTKPFLDARLLKEHTINEHSIKEIKRELNNRVRDKTLKVDVTYLQCRICLQTAPNLQNLKMHLKDHGKKIEPNLQDNIIPFKLGGENFDCQVCGERYLKLRLLIIHMSKHFNNYSCEICGSVFISLNLLKRHLQTHESGSFPCEKCDKVFSNAAKRTLHTRGVHQKQFPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCDTCGREYDLKYHLLIHIRSVHLHERNQECPVCHSRFFSKYCLSRHMVIHTGEKNFKCDVCGKAYARRKNLKEHSRSHEVGLCSICGQNYGDQNNLIAHVSNVHGAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00000575;
- 90% Identity
- iTF_00282672;
- 80% Identity
- -