Cnup013666.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catocala nupta
Gene Symbol
-
Assembly
GCA_963675205.1
Location
OY776084.1:3400731-3411320[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00015 0.026 16.7 1.0 1 23 179 201 179 201 0.98
2 16 0.061 11 8.5 0.5 3 23 224 244 222 244 0.95
3 16 0.00013 0.022 16.9 0.1 1 23 269 291 269 291 0.94
4 16 0.28 50 6.4 0.2 5 21 299 315 296 316 0.93
5 16 0.0061 1.1 11.6 3.3 1 23 383 406 383 406 0.98
6 16 1e-05 0.0018 20.4 1.4 1 23 412 435 412 435 0.95
7 16 2.4e-05 0.0043 19.2 0.4 1 23 441 463 441 463 0.98
8 16 0.00031 0.054 15.7 2.2 1 23 469 491 469 491 0.98
9 16 2.1e-05 0.0036 19.4 1.3 1 23 497 519 497 519 0.98
10 16 8.4e-06 0.0015 20.6 1.0 1 23 525 548 525 548 0.97
11 16 3.1e-05 0.0054 18.9 4.4 1 23 554 577 554 577 0.98
12 16 0.00016 0.028 16.6 3.5 1 23 584 607 584 607 0.97
13 16 0.029 5.1 9.5 2.2 1 20 613 632 613 635 0.95
14 16 0.021 3.7 9.9 0.1 1 23 641 664 641 664 0.97
15 16 0.093 16 7.9 4.7 2 21 668 687 667 688 0.92
16 16 9.8 1.7e+03 1.6 2.8 2 10 692 700 692 702 0.92

Sequence Information

Coding Sequence
atggctgcttttactaacgaggaatacgctgatatgttgatggcttacggcaaagctgatggaaatggacgagaagcaaaaataatttatgaagagCGTTTTCCCAATAGACGTCAACCTAATCGTCATACTTTTGAAACGACATTTAGACGCTTAAGGGAAACTGGCAATCTAAATCGCCGTGAACCTGGAGTTGCCAGACAACGTAACGTTGCTGATGACGAACGCATTTTGGAAGCTTTTGATGAAGATCCCACAACAAGTATCCGCACTGTAGCTGCAACACTAAATCTAAGCCCATGGAAAGTGTGGTCTGTTCTTCGCGCTAATGGAAAGTATCCTTTTAATTACACTCCCGTGCAAGGTCTAGAAGAAAACGATTATCAAAGACGCGTCCAGTTTTGCCGTCTCTTGTTACACATGGATGTTGACAAACGCGACTTCTTAAAAAGTATCCTGTGGACGGATGAATCAAAGTTTTCAAGGGAAGGCATTgaaCGAATATGGGAAGTCAAGTTAAAAACAGTCCAGTTTCACAAATGTGACCAATGTCCAAAAGCATTTTTAAATCCAGAAGAATTAAAGAATCATGTCAAACGTCATAAGGACAGATTTCTCAAACATGCTCAGAGTTCATATGTAAAGATTGACAAAGTAGATTTATTGGACTGTGATACCTGTGGACAAAGGTTTTTGAATAAAAAAGCTCTTTTGTTACATAGAGTGAAGCACATAAACCAGACTGTaaaacacacgaaacagcaacaaaataaattatacgacAACAAAAGCATCCCGAAACCATACCAGTGTCCAGAATGTGATTACAAGTTCGCAGCTAGGAGCACCCTTGAAGCACATTCAGTAATCCATCAAGCCTTCCCACACATCTGCTACTGTGGCATTGGCTACTACAAACAGCAAGATCTAAACAACCACATAAAATTAGTGCAATGTAAACCCAAAGTAGAAGAAATCAAACTTAATAATGTAGTTAAAGAGGCAAAGGAAACATTTAAAGTGAAATTCTCGTTTAAGAAGAAAGTTGTGAAAAGTTCCAAGTTGAACGCTGACGTGAGTGTTAAACCACAACCGGTGATACTGCCGCCTTTAGACATCGAGTTTGAACAGTATAATTCGAACAAATTCCAGTGTCCCAAGTGCCTTAAATTCTTTACTGCGAAGCGGCATGCCCAATTACACTATCGAAGTATACATAGAGGCGAACGTCCTCATGTGTGCCACATATGCTCTAAAGCCTTCACTCAGCCCGGAGCAATGAAAAAGCATATACAGCAAGTACACATAGCTGAGAAGAATTTCGAGTGTCAATATTGTGACAAAGCTTTCACAAGCTTAGATCTGCAAATACGACATGAGCGGATTCACACCGGGTACAAACCACACAAGTGCTCGTATTGTGAGAAGGCGTTTAGCGATCCCAGCGCTCACATACGACACGAAAGAATCCACACCGGAGATAAACGCTACCGCTGTGCGCTATGCCCTAAAGCGTTCACAGACCATAGTGCTTTATATGCACATAAAAAACGACATGCAAACCAAAAAGATTTTAAGTGTGAGAAATGTGATAAAAGATTTTATGCCCGGTCATATCTTgtgaaacatataaatattgttcaCAATCGCCAGCTAGATTATACTTGCCAGCATTGCAAGAAAGACTTCAGTTCGAAAATTAATCTTAGCTCGCATATACAGAGGAAGCATAATGACTCTAGAGATACTTATACATGTCATCTATGTTTCAAGACGTTATcagataaaatgtatttaaaaagacatttaaaaatagtccaTGAGAAAAGAAAAGCATATACTTGTGAATATTGTTGCAAACAGTTTGCATATAGAAATGATTTAATAAGACATTTACCATTACATACCAACGATAAAAAATTTGAGTGTGATTACTGTAGGAATGCATATTATTCGAAGGCGGTATTGGCTTCTCATATTCTTAGAGTACACATAGCGATATACTGTAAAGCATGCCATCGATATTTTTGTAGCAACAGCGATTTTACTAAACACAAACTGAAGGCAAGCGAGCAGTGTGAGATTTGTGATAAAGAATTCCACTGTAAACGTGGAGTAGGGTCCGGACCTAAAACAGCAACGGCCAATGGCCCTAAAGTTTTGAGCTGGAACCTTATATCCTTGTGTGAACCTGGCACCTGA
Protein Sequence
MAAFTNEEYADMLMAYGKADGNGREAKIIYEERFPNRRQPNRHTFETTFRRLRETGNLNRREPGVARQRNVADDERILEAFDEDPTTSIRTVAATLNLSPWKVWSVLRANGKYPFNYTPVQGLEENDYQRRVQFCRLLLHMDVDKRDFLKSILWTDESKFSREGIERIWEVKLKTVQFHKCDQCPKAFLNPEELKNHVKRHKDRFLKHAQSSYVKIDKVDLLDCDTCGQRFLNKKALLLHRVKHINQTVKHTKQQQNKLYDNKSIPKPYQCPECDYKFAARSTLEAHSVIHQAFPHICYCGIGYYKQQDLNNHIKLVQCKPKVEEIKLNNVVKEAKETFKVKFSFKKKVVKSSKLNADVSVKPQPVILPPLDIEFEQYNSNKFQCPKCLKFFTAKRHAQLHYRSIHRGERPHVCHICSKAFTQPGAMKKHIQQVHIAEKNFECQYCDKAFTSLDLQIRHERIHTGYKPHKCSYCEKAFSDPSAHIRHERIHTGDKRYRCALCPKAFTDHSALYAHKKRHANQKDFKCEKCDKRFYARSYLVKHINIVHNRQLDYTCQHCKKDFSSKINLSSHIQRKHNDSRDTYTCHLCFKTLSDKMYLKRHLKIVHEKRKAYTCEYCCKQFAYRNDLIRHLPLHTNDKKFECDYCRNAYYSKAVLASHILRVHIAIYCKACHRYFCSNSDFTKHKLKASEQCEICDKEFHCKRGVGSGPKTATANGPKVLSWNLISLCEPGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-