Cnup053652.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:13113415-13123706[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.68 1.2e+02 5.2 0.5 1 23 101 124 101 124 0.95 2 18 0.32 56 6.2 0.6 3 23 152 173 152 173 0.96 3 18 0.53 94 5.5 1.5 2 23 196 218 195 218 0.93 4 18 0.011 1.9 10.9 0.3 1 23 222 245 222 245 0.93 5 18 0.00052 0.092 15.0 1.0 2 23 249 271 248 271 0.93 6 18 0.18 31 7.0 0.1 2 23 277 299 276 299 0.93 7 18 0.00024 0.043 16.0 0.7 1 23 306 329 306 329 0.97 8 18 0.098 17 7.8 4.0 2 20 336 354 335 357 0.92 9 18 1e-07 1.8e-05 26.6 2.2 1 23 363 385 363 385 0.99 10 18 0.014 2.5 10.5 2.1 2 23 481 503 480 503 0.90 11 18 0.068 12 8.3 2.9 2 23 526 548 525 548 0.93 12 18 0.0024 0.41 12.9 0.0 1 23 554 577 554 577 0.94 13 18 4.2e-06 0.00073 21.6 0.4 2 23 583 605 583 605 0.96 14 18 0.015 2.7 10.4 0.8 2 23 611 633 610 633 0.93 15 18 0.00057 0.1 14.9 1.6 1 23 640 663 640 663 0.95 16 18 0.00036 0.063 15.5 0.3 2 23 670 691 669 691 0.93 17 18 1.7e-05 0.0029 19.7 3.0 1 23 697 719 697 719 0.99 18 18 5.4e-06 0.00096 21.2 1.1 1 23 725 747 725 748 0.95
Sequence Information
- Coding Sequence
- atgaaCGAGCTGAATTTTATAGTTGGTAACCGCAGCTTCAATCACGCACAACAAATCGACAATCAACGCGTAGCCCAACAAAATCGACGCAGCTTCTTGGTCAGTAACGAAGCTCGAAAAGATCGAAAAGAGAAGTTGCAAGCTGAAAACAAAACGTATGAAGCTGAAGAAGGATTGCAATATGACCGATCAAAGGAGCATAAATTACTAGAGGAACGTCGAAAGGAACAGCTCGCTACGTTACTCACCATCATTATACAAAGTACTACCATAATACCGTTCAGATGGCATAAGAGCAAATACATGTGCTACTACTGCCGGTCCTTGTTCGTAGAAAGTGCGAAGTTAAGAGAACATACGGACATGGAACATCGTGAAATCGAAATAGAATCAGTTATCGTCAGAACATTGTATAGAAAGGGTactattaaaatagatatatcCGACCTTTGGTGCTCTAGGTGCGAAGAACAATTCGAACGTTTCCAGGATTATTTCAATCACTTGTCAGTTGTTCATGGCATATTTCTTGATAAAGATACCTCTAAATGCTTTGAGTGCTTCCATTTAGGAGACAATGGAATGTCCTGTTTGGATTGCGGCCAATATTTCAGGTTCTTCGGGCCCTTGCTTCTCCACAGACATAAATATCACACGGATCATTTCCTTTGCGAGATCTGTGGCCAGGGCTTTGTTGGTAAACACAACGTTGACAATCATGTGAAACAAATCCATGAGGTTAAATCGTGCAAACACTGCGAGCTCACTTTTCCGACGCAGTATTCTTTAGCGAATCACGTGGAAAATGTCCATAGGACTGATAAACTAAAATGTCCATTATGCTCAGAGATTTTAGGCAATAGATATTTAAAGAAACGACATATGGCTTTAGTTCACGATTGCAAAAATGCGCAATTCGTGTGCGAATGGTGTTCGAAGATATTTacgagaaataataaatatgtgcaACACATATCGAGAGTGCATTATAAGGAAAAGAATTGTACATGTGAGGTATGTGgccataaagtgtttaatttggACGCCCTGAGGCGTCACATGGTCTGTCATGACGACGCCAGACCGTTCAAATGTGAGGTGTGCGAAAAGACCTTCAGAAGAAAGAAGACGCTGGTGATACACATGAGAACGCATAAATTAGATGATGATTATCACACCCTACTAGCAGACGAAAGATACGCTGAAAAGCAACGGAAAGACGACCTAACGAGACTGATCACCGTCGTGCTCGAGAACTCGACCATTATGCCCTTTCGCTGGGCAGCCAACAAGTATATGTGCTTCTTTTGTTGCTGCACTTTCGTAGACTGCGCCATGTTAAAAGAACATACGTTAGAGGAACATAAAGACGCCAAACTAAGACGTGTCTTAAGAGCATTgttgggcagcggtcgcgtaaAATTGGACACTTCTGATATCAGTTGCAGGAGATGCCCAAAACGCTTTGAAAATTTCGACAACTTCTTACACCATATTTATGATACCCACGATTTAAAATTCAACCAAGATATAGCAAGATGCCTCTTTACTTTCAACTTGTCTGACGATGGAATGTCCTGTCATGAGTGTGGACAAGAATTCAGGTTTTTTGGGCCGTTATTGAAGCATGCACACAAGTtccacaataaatataaaacgttCCTTTGTGAAATATGTGGTCAGGGTTTCGTAGCGAAAGCGAACGTCGAAAGCCACATCAAAAATGTGCACAGTTTGAAAGATAGACAGTGTCAGAAGTGTGATAAAGTATTTAGGAATCCGTACGCGTTGCAAGTTCATCGTGAGAGAGCGCATAAAACTGAATCGTTGAAATGTCCTAAGTGTCCTGAAATTTGCGCGTCCAAGTATCTAAAAAAGCGTCATTTAGCGTTGGTGCACGATGTGAAAAAGCTCCAATTTAACTGTGATCAGTGCGATCGTGTTTTTACGATGAAGAGTCGACTGGTTCAGCACAAGTTGAGGACTCATTTGAAGCAGAAGACTGTTTCTTGTGAGATTTGTGGCtttaaagttttcaataatgATCTTTTGAAGCGGCATATGGTTCGTCACGACGACTCTAGGCCATTTCAGTGTGAATATTGTAAGAAAAGTTTTCAGAGGAAGAAGACTTTGGATGTTCATACGAGGATACACACTAACGATAGAAGGTACGCGTGTAAGGAGTGCGGGAGGGCGTTTGTTCAAGTTACCAGTTTTAAGCTACATATGAGGGTGCACCACGGAGGGAATGAAGGCTCCTCTTGGAATTGA
- Protein Sequence
- MNELNFIVGNRSFNHAQQIDNQRVAQQNRRSFLVSNEARKDRKEKLQAENKTYEAEEGLQYDRSKEHKLLEERRKEQLATLLTIIIQSTTIIPFRWHKSKYMCYYCRSLFVESAKLREHTDMEHREIEIESVIVRTLYRKGTIKIDISDLWCSRCEEQFERFQDYFNHLSVVHGIFLDKDTSKCFECFHLGDNGMSCLDCGQYFRFFGPLLLHRHKYHTDHFLCEICGQGFVGKHNVDNHVKQIHEVKSCKHCELTFPTQYSLANHVENVHRTDKLKCPLCSEILGNRYLKKRHMALVHDCKNAQFVCEWCSKIFTRNNKYVQHISRVHYKEKNCTCEVCGHKVFNLDALRRHMVCHDDARPFKCEVCEKTFRRKKTLVIHMRTHKLDDDYHTLLADERYAEKQRKDDLTRLITVVLENSTIMPFRWAANKYMCFFCCCTFVDCAMLKEHTLEEHKDAKLRRVLRALLGSGRVKLDTSDISCRRCPKRFENFDNFLHHIYDTHDLKFNQDIARCLFTFNLSDDGMSCHECGQEFRFFGPLLKHAHKFHNKYKTFLCEICGQGFVAKANVESHIKNVHSLKDRQCQKCDKVFRNPYALQVHRERAHKTESLKCPKCPEICASKYLKKRHLALVHDVKKLQFNCDQCDRVFTMKSRLVQHKLRTHLKQKTVSCEICGFKVFNNDLLKRHMVRHDDSRPFQCEYCKKSFQRKKTLDVHTRIHTNDRRYACKECGRAFVQVTSFKLHMRVHHGGNEGSSWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -