Cnup053399.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776106.1:11857868-11862611[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-07 0.00011 23.7 0.0 3 37 16 51 14 56 0.88
Sequence Information
- Coding Sequence
- ATGCCTCGCacatacaaaagaaaaacagaaagaaAATACACAATTGAAACACTGAAGCTAGCTATAcgggaaataaaagaaaaaaagataaGTTTCAGAAAAGcggaagaaatatataatataccaagAGCTACACTTTttgaccaaataaaaaaaaatgaagaagATAATCTGGCTGATCCTAAACGTGGTGCGAAGCCTGTATTTAATGAGTCACAGGAACAAGAAATAATCAGTTACATTCTTAAATCTTCTAAAAAGTTTTATGGGCTCACTATACCGACGCTACGAAAAATTGCATTTGATTTTGCTGAGGCAAACAAATTGAAACATAGAtttgataaaacaacaaaaatagctGGAATGGACtggtattattgttttatggcAAGACATCTCAAAATATCTCTTCGAAAACCTGAAGCGACCTCATTGCACAGAATTTTAGCATTTAACAAAGAAGAGACTGGTATATTTTTTGACAACTTGACCCAGTTGATGTTAAAATATCGTTTTGAGTCAAATGCTATATACAATGTTGATGAAACTGGCATCAGTACAGTTCAAAGAAATTCTAAAATACTAGCCCCTAGAGGTATGAAACAGAACGACTTATCTATAGATGATTATGGGAAAAGACTGTCGGAAATGTTTGTCAATCTTACAATTACACAGGCCGGTGGAGATTCGGTAAAATATGACGTGTTAAAATCTGTTAATGAGAATCAAgctattaaacagttttgtgaGGGTCTGCGTAATCGCAGGATTGGCACCGTCATTGCAGCTCAGAAATTTGATGACCTCAAGAACGCAATTCAAGCAGCAGTCGATGAGGATTGCTCATCATCAAACTCAGCAGGCAGACAACTTTTTACAACACGCAGAGAGGCTACGGTAGAGGTGCGTATAACAGCGGACCCCAGCCGCGCGGCCGATCGAGCCACTGGTTGCAGCCGCGCATCAGGCAGTGTTTCCAGCAGCCGGCAGCACAAGCGGTACCCAAGGGTAGAGGCTATTACAGAGTTGGCAGTTGACTCTCAACCTGTGCATTTCATTTCACTCCCGTTAGACAACCCCACACACCGCAAACctcacattggtgaccccgaccgACGACGCCCGACAGACGACGCCCGACGCCCGACCGACGACACCCGACACCCGAGAGAAGTCGCGCGTGTATTCGCATCGGAAATATTTCTCGTCACCGACTTTGCGATGTACCACGCCCCGATTCCTACAGCTTCGACGccaacaccgccaactccgTCAGTTGCTGTGAAGAATGAAGAGCAACAGGCTATCATTTCCAGCCTGTCGGTCGCGAATAGGATACCCAGTTTCTGGCCCGAAAACCCACGGCTATGGTTTTTTCAAGTAGAAGCGATCCTTGCCCCGCAGAAGACATCCGACGCAAACAAATATTTCATGGTCGTGGCAAAACTCAGCAAAGAAGTAATATAG
- Protein Sequence
- MPRTYKRKTERKYTIETLKLAIREIKEKKISFRKAEEIYNIPRATLFDQIKKNEEDNLADPKRGAKPVFNESQEQEIISYILKSSKKFYGLTIPTLRKIAFDFAEANKLKHRFDKTTKIAGMDWYYCFMARHLKISLRKPEATSLHRILAFNKEETGIFFDNLTQLMLKYRFESNAIYNVDETGISTVQRNSKILAPRGMKQNDLSIDDYGKRLSEMFVNLTITQAGGDSVKYDVLKSVNENQAIKQFCEGLRNRRIGTVIAAQKFDDLKNAIQAAVDEDCSSSNSAGRQLFTTRREATVEVRITADPSRAADRATGCSRASGSVSSSRQHKRYPRVEAITELAVDSQPVHFISLPLDNPTHRKPHIGDPDRRRPTDDARRPTDDTRHPREVARVFASEIFLVTDFAMYHAPIPTASTPTPPTPSVAVKNEEQQAIISSLSVANRIPSFWPENPRLWFFQVEAILAPQKTSDANKYFMVVAKLSKEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281182; iTF_00281183; iTF_00281184;
- 90% Identity
- iTF_00281182; iTF_00281183; iTF_00281184;
- 80% Identity
- iTF_00281182; iTF_00281183; iTF_00281184;