Cnup039294.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- cheC
- Assembly
- GCA_963675205.1
- Location
- OY776098.1:4235478-4237598[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-08 3e-05 25.4 0.0 1 38 8 46 8 52 0.92
Sequence Information
- Coding Sequence
- ATGCCAAAGATACCCAAATACACCAAAGAGGCCCTGGACGAggctttagaaaaaataaatacaaaagtaatgtCTTTAAGAGCAGTCGCCAAACAATACAATATACCCCGAGCAACTttacaatttaaacttaaaaatcCAAATTCAAAATCTCAATTTGGCCCCACACCGTATCTAACAGATGATGAAGAAGTTATTATCACAGATTGGTTAGTTAATATGGCTCGTAAAGGATTTCCTAGGAAGTCCGATGACGTTTTGGACACAGTTCAAAAGTTTTTAACTGAAAATCCACGCGTTACTCCTTTTCTTAACAACAGGCCCGGTCAGGGATGGCTCAAAGCTTTTTTAAAACGTCACCCCATTTTAGTACCAAGAACCAGTGAGGGGGTTACCAAAGCCAGTGCCTGTGTGTCTGAAACCGACATAAGAAAATGGTTTCTTGAAATAAAGAACTACATGACTGGCGAAAACCTGTTAGACGTAATTCAGGATCCAAAGCGTGTCTTCAATGCTGACGAGACAGGATTCCAACTCTGTCCTTCTACGGGGCGCGTGCTAGCTGCTAAAGgagataaaaatgtttatgctGTGGACCAAGGAAACCCCAAAGAAAATGTTACAGTGCTGTTCACATTTTCTGCCGATGGCAGGACTTGTCCTCCATTAATTGTGTTTCCATACAAACGACTGCCTGAAAAAATTGCGACATCAGTGCCACCTAAATGGGGCATCGGACGCAGTGATAAAGGGTGGATGACGGCAGATGTCTTTAACCAATTCATTACTGAAATATTTGCACCCTATCTTGctgaaaataacataaaaagacCGGTCATCCTCTTTATTGATGGCCATAAAAGTCATATTACATTACAACTTAGTTTGACTTGTAAAGAGCAAGGAGTTGAATTGATAGCTCTTTACCCTAATACCACTCGAATCACTCAGCCAGCAGACGTTTCCGTTTTTGGaccaataaagaaaatgtatcgAAAAGCAGTACGCAAATTTCAATCAGAAAACGTTGGAGAGGTGGTAACAAAGCTCAACATAGCTATGATTTTAAAAACCGTTGTTGACAACCTAAAATCTGAAACTATAATAAATGGTTTTCGAGCATGTGGCTTGTGTCCATTTGATGAGAATGCAATTGATTACTCAAAATGTTTAGGTGCACCGAAAAATGTTGAAGGGACAGGCAGACAAACAGTAGACAAGCACGGAAACAAGGTCATGACTCTAAAAGACTTCGAAAATATTGTAGGAGTCGAAATGATAGACAAGATGAAAGCACTGAAATCTCAAGGTATAATGCAGAATAGTTCCTCTCCAACATTATTCAAACTCTGGAGTTTTTTTCAAAGTGATCCTCCAGAGACAGAATCAACTAATATTGAAATACAATCAGCTAATAACACAACAAATGTAAATCTCATAAGTGAAAAAAATGTGACAACAGTTAAAATTACCATGACACCTACCAAAATTCCCACAGATTTGTGCCAACCTTCCACTTCTACCACTGAAACCACAATGGCAGAAACTGCTCATGTTAATAAGTCGATTAGTGACTACTTACAAAATGCCCCAGAAAATAGAAGGAAGTTCATTCGAAAGACAGAAAAGACTCCATTTGTGATTACCTCTGAGAATTTTAGATCAGCTATTGAAAAGAAAGAGATGGAAAAGCAAGAAAAAGAGAATCAAAAAatggaaaggaaaagaaaaagagaGGAGAAGAAAGAAGACGCTCTGAAGATCAAAAAAGATAAAGGCGTAggaaagaaatcaaaaaatagaaatattaatataaagactGAAAATTCTATAGAAGAAAATACTACGACTACAATTAAAAACGACGGTAAACTTAGGATTTTATCCAATATAGAGCTGGTTACTTGCGACATGTGCCGGCGTTTGGCTGATAAAAATAAGTCACTAGTATGTAGTTCCTGCAAAAAGGATTATCATCGTCATTGCATTCCTCGAAAACACCTTGATCATATGCCGGATGACGATGAGCTTTCTGGCTTTGTATGCCACAACTGTTTTTCGTTGAATGATGACTCTGGTGATAATTCTGAATCTTCTGAAGATGATGAAGACATGTTTTAG
- Protein Sequence
- MPKIPKYTKEALDEALEKINTKVMSLRAVAKQYNIPRATLQFKLKNPNSKSQFGPTPYLTDDEEVIITDWLVNMARKGFPRKSDDVLDTVQKFLTENPRVTPFLNNRPGQGWLKAFLKRHPILVPRTSEGVTKASACVSETDIRKWFLEIKNYMTGENLLDVIQDPKRVFNADETGFQLCPSTGRVLAAKGDKNVYAVDQGNPKENVTVLFTFSADGRTCPPLIVFPYKRLPEKIATSVPPKWGIGRSDKGWMTADVFNQFITEIFAPYLAENNIKRPVILFIDGHKSHITLQLSLTCKEQGVELIALYPNTTRITQPADVSVFGPIKKMYRKAVRKFQSENVGEVVTKLNIAMILKTVVDNLKSETIINGFRACGLCPFDENAIDYSKCLGAPKNVEGTGRQTVDKHGNKVMTLKDFENIVGVEMIDKMKALKSQGIMQNSSSPTLFKLWSFFQSDPPETESTNIEIQSANNTTNVNLISEKNVTTVKITMTPTKIPTDLCQPSTSTTETTMAETAHVNKSISDYLQNAPENRRKFIRKTEKTPFVITSENFRSAIEKKEMEKQEKENQKMERKRKREEKKEDALKIKKDKGVGKKSKNRNINIKTENSIEENTTTTIKNDGKLRILSNIELVTCDMCRRLADKNKSLVCSSCKKDYHRHCIPRKHLDHMPDDDELSGFVCHNCFSLNDDSGDNSESSEDDEDMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01564577;
- 90% Identity
- iTF_00282261;
- 80% Identity
- -