Cnup056046.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- cheC
- Assembly
- GCA_963675205.1
- Location
- OY776108.1:161399-176028[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.56 2.1e+02 3.5 0.0 18 39 367 388 354 391 0.85 2 2 1.8e-07 6.7e-05 24.3 0.0 1 38 693 731 693 737 0.92
Sequence Information
- Coding Sequence
- ATGGATAATGGCGTTGTCCAACGTATAAAAGCTCACATATCTAGTTTTCCTGCAGAACAGTCACATTACTCCCGAAACAAAAATTTGCACAAGCTTTATTTGTCACCGTTGCTAAATGTGACTAAGATGCATAGTCTTTACCTGGAAATGTGTCAACGTGAGGACTTACTTGATAAATACCGCGTCAAGAAAAGTTCATACaacaaaatttttgttacaGAATTTAATTTGTCGTTTGGATACCCAAAGAGTGATACGTGTGCTACTTGCAATGCCGGAGACTCAAACGACGaacataaatcaaattattatgcTGCTGTGGAAGCTATGCAAATGGACAGAAAAAAACCAATCCGGGATAGAGATATTGTGTACATTACGATTGATTTACAACAAACAATGCCGTTGCCAAAACTGACAACTTCAAAAGCGTTCTACTTACGCCAACTCTGGGTTTATAATCTGGGTATTCATATTAATGATGGAGGTAAGGAAAAGGCCGTCTGTTGTACATGGACGGACGCAAGCGCACTTCTAAGATTTGTAGAGTTTGAATACAACGGTCTGGAATATCTTTGTCGACCGTGCTGGCAGCGGGCTCAACGTGCTGTACAACGTAATATAAATCCTGTCCCTCACGAATGCACACTGCAGATTGAAGAGTATTCTAGAGTAGCTAACAGCGCAGCGAGCTGCATGTTTGAACAATGTAGAAGAATTACTCGTCAACGGATTCCTGAAAATATACGACTGTCACTTTTGATGGATTCCAATGTATTTATACCACAAGAAGCTAGAGTGTGTGAAACACATTTAAGAAACAATGACTGGGATGAAATTATTGATAGCCCGAATCTAAGACATGATTTTAATAGTGCTCATTTCTTAGAAATGATGAGTTTAATGAAAGCAGCTGTGTCAAGGGGctgtattttgaattttgaaaatattgaagatatGGACAATGATGAAATACATATTCGATTGGGTTTTAACCGAGAACAATTCTCAGAGATCCTGACACAGACGCCTTCCTTGGCAGGCTCCAATTCAAGAACAGCactagctatttatttaatgaagttgCGAAATGGTGAAAGCAACGAAAGGTTAGCATCGCTCTTTAAAATGAGTAGAAGATCACTAGAGAGGCACCTAAAAAGAGcaagagattgtttatttgctgAGTTCGTGCCTAGACATCTGGGTTTCAACCACATAAATAGAAGAATGGTCGCTGAACGTAACCTTTATATACCGAACGCTTTGTTTGGAAACCCTAACTCAGCATTAGACGAGAGAAAAGCCATAGTAATAATGGacggaacatatatttatatacagaagaGTTCCAATTATTCTTTCCAAAGAGAGACATATAGTTTGCATAAGTattcaaatcttttaaaaccATTCATTATTGTAAGCTGCGATGGTTATATATTAGACGTCTGTGGTCCATATGCAGCTACCGACTCGGATGCTACAATTCTACAAAGGATGATATATGACGAAGAAAGCACGTTTCATTGGTTCTTTAGTCCTggcgatattttcattttagatcGTGGGTTTAGAGACGCCCTGCCGGATTTGGCACAATGGGATTTCTCAGCATATATGCCTGAAACTAAAGACCGTGGTGCAGATCAGCTCACAACCGAACAAGCGAACAGATCTAGAATGGTCACCCTATGCCGCTGGGTTGTAGAAGTTATAAATGGTCGATTCAAACGTGACTTCAAGTTGTTCCGacaagattattttaatcggTCTCTAAGTCACATGTTTCATGACTTCAAAATAGCTGCTTCACTTATTAACGCTTTCCAGGAGCCATTCCACGATAATGTGCATGCAGCCACATTTGTGGACATTATAAATGATCGCATGAATCGACCTAATCAACTAGCGGACTTTGTTGtccgtaacaatataaataggcaaagagcAACATTTCAAAGCATCACCGGTGATCAGACTATTTTCGACGATTTTCCTAATTTGTCAGAAGATGATATTATCCTTTTCGCTCTGGGTACACAAGAAAAGAATATGCCAAAGATACCCAAATACACCAAAGAGGCCCTGGACGAggctttagaaaaaataaatacaaaagtaatgtCTTTAAGAGCAGTCGCCAAACAATACAATATACCCCGAGCAACTttacaatttaaacttaaaaatcCAAATTCAAAATCTCAATTTGGCCCCACACCGTATCTAACAGATGATGAAGAAGTTATTATCACAGATTGGTTAGTTAAGATGGCTCGTAAAGGATTTCCTAGGAAGTCCGATGACGTTTTGGACACAGTTCAAATGTTTTTAACTGAAAATCCACGCGTTACTCCTTTTCTTAACAACAGGCCCGGTCAGGGATGGCTCAAAGCTTTTTTAAAACGTCACCCCATTTTAGTACCAAGAACCAGTGAGGGGGTTACCAAAGCCAGTGCCTGTGTGTCTGAAACCGACATAAGAAAATGGTTTCTTGAAATAAAGAACTACATGACTGGCGAAAACCTGTTAGACGTAATTCAGGATCCAAAGCGTGTCTTCAATGCTGACGAGACAGGATTCCAACTCTGTCCTTCTACGGGGCGCGTGCTAGCTGCTAAAGgagataaaaatgtttatgctGTGGACCAAGGAAACCCCAAAGAAAATGTTACAGTGCTGTTCACATTTTCTGCCGATGGCAGGACTTGTCCTCCATTAATTGTGTTTCCATACAAACGACTGCCTGAAAAAATTGCGACATCAGTGCCACCTAAATGGGGCATCGGACGCAGTGATAAAGGGTGGATGACGGCAGATGTCTTTAACCAATTCATTACTGAAATATTTGCACCCTATCTTGctgaaaataacataaaaagacCGGTCATCCTCTTTATTGATGGCCATAAAAGTCATATTACATTACAACTTAGTTTGACTTGTAAAGAGCAAGGAGTTGAATTGATAGCTCTTTACCCTAATACCACTCGAATCACTCAGCCAGCAGACGTTTCCGTTTTTGGaccaataaagaaaatgtatcgAAAAGCAGTACGCAAATTTCAATCAGAAAACGTTGGAGAGGTGGTAACAAAGCTCAACATAGCTATGATTTTAAAAACCGTTGTTGACAACCTAAAATCTGAAACTATAATAAATGGTTTTCGAGCATGTGGCTTGTGTCCATTTGATGAGAATGCAATTGATTACTCAAAATGTTTAGGTGCACCGAAAAATGTTGAAgggacagacagacaaacagtaGACAAGCACGGAAACAAGGTCATGACTCTAAAAGACTTCGAAAATATTGTAGGAGTCGAAATGATAGACAAGATGAAAGCACTGAAATCTCAAGGTATAATGCAGAATAGTTCCTCTCCAACATTATTCAAACTCTGGAGTTTTTTTCAAAGTGATCCTCCAGAGACAGAATCAACTAATATTGAAATACAATCAGCTAATAACACAACAAATGTAAATCTCATAAGTGAAAATAATGTGACAACAGTTAAAATTACCATGACACCTACCAAAATTCCCACAGATTTGTGCCAACCTTCCACTTCTACCACTGAAACCACAATGGCAGAAACTGCTCATGTTAATAAGTCGATTAGTGACTACTTACAAAATGCCCCAGAAAATAGAAGGAAGTTCATTCGAAAGACAGAAAAGACTCCATTTGTGATTACCTCTGAGAATTTTAGATCAGCTATTGAAAAGAAAGAGATGGAAAAGCAAGAAAAAGAGAATCAAAAAATGGAAAGGAGAAGAAAAAGAGAGGAGAAGAAAGAAGACGCTCTGAAGATCAAAAAAGATAAAGGCGTAggaaagaaatcaaaaaatagaaatattaatataaagactGAAAATTCTATAGAAGAAAATACTACGACTACAATTAAAAACGACGGTAAACTTAGGATTTTATCCAATATAGAGCTGGTTACTTGCGACATGTGCCGGCGTTTGGCTGATAAAAATAAGTCACTAGTATGTAGTTCCTGTAAAAAGTATTATCATCGTCATTGCATTCCTCGAAAACACCTTGATCATATGCCGGATGACGATGAGCTTTCTGGCTTTGTATGCCACAACTGTTTTTCGTTGAATGATGACTCTGGTGATAATTCTAAATCTTCTGAAGATGATGAAGACATGTTTTAG
- Protein Sequence
- MDNGVVQRIKAHISSFPAEQSHYSRNKNLHKLYLSPLLNVTKMHSLYLEMCQREDLLDKYRVKKSSYNKIFVTEFNLSFGYPKSDTCATCNAGDSNDEHKSNYYAAVEAMQMDRKKPIRDRDIVYITIDLQQTMPLPKLTTSKAFYLRQLWVYNLGIHINDGGKEKAVCCTWTDASALLRFVEFEYNGLEYLCRPCWQRAQRAVQRNINPVPHECTLQIEEYSRVANSAASCMFEQCRRITRQRIPENIRLSLLMDSNVFIPQEARVCETHLRNNDWDEIIDSPNLRHDFNSAHFLEMMSLMKAAVSRGCILNFENIEDMDNDEIHIRLGFNREQFSEILTQTPSLAGSNSRTALAIYLMKLRNGESNERLASLFKMSRRSLERHLKRARDCLFAEFVPRHLGFNHINRRMVAERNLYIPNALFGNPNSALDERKAIVIMDGTYIYIQKSSNYSFQRETYSLHKYSNLLKPFIIVSCDGYILDVCGPYAATDSDATILQRMIYDEESTFHWFFSPGDIFILDRGFRDALPDLAQWDFSAYMPETKDRGADQLTTEQANRSRMVTLCRWVVEVINGRFKRDFKLFRQDYFNRSLSHMFHDFKIAASLINAFQEPFHDNVHAATFVDIINDRMNRPNQLADFVVRNNINRQRATFQSITGDQTIFDDFPNLSEDDIILFALGTQEKNMPKIPKYTKEALDEALEKINTKVMSLRAVAKQYNIPRATLQFKLKNPNSKSQFGPTPYLTDDEEVIITDWLVKMARKGFPRKSDDVLDTVQMFLTENPRVTPFLNNRPGQGWLKAFLKRHPILVPRTSEGVTKASACVSETDIRKWFLEIKNYMTGENLLDVIQDPKRVFNADETGFQLCPSTGRVLAAKGDKNVYAVDQGNPKENVTVLFTFSADGRTCPPLIVFPYKRLPEKIATSVPPKWGIGRSDKGWMTADVFNQFITEIFAPYLAENNIKRPVILFIDGHKSHITLQLSLTCKEQGVELIALYPNTTRITQPADVSVFGPIKKMYRKAVRKFQSENVGEVVTKLNIAMILKTVVDNLKSETIINGFRACGLCPFDENAIDYSKCLGAPKNVEGTDRQTVDKHGNKVMTLKDFENIVGVEMIDKMKALKSQGIMQNSSSPTLFKLWSFFQSDPPETESTNIEIQSANNTTNVNLISENNVTTVKITMTPTKIPTDLCQPSTSTTETTMAETAHVNKSISDYLQNAPENRRKFIRKTEKTPFVITSENFRSAIEKKEMEKQEKENQKMERRRKREEKKEDALKIKKDKGVGKKSKNRNINIKTENSIEENTTTTIKNDGKLRILSNIELVTCDMCRRLADKNKSLVCSSCKKYYHRHCIPRKHLDHMPDDDELSGFVCHNCFSLNDDSGDNSKSSEDDEDMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -