Cnup014515.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776084.1:18725260-18725880[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 5.3e-06 27.8 0.0 1 35 8 41 8 47 0.89 2 2 4 1.5e+03 0.8 0.1 12 21 189 199 187 199 0.84
Sequence Information
- Coding Sequence
- ATGGCACCAAGAAAAGACTACACAAAAGAACAAATGGCCAAGGCTATCGAAGAAGTAAGAAAAGGAGAGAAAATATCTGTTGCCGCTACAAGATACGGAGTCCCAAGGATaactttacataataaaatcacCGGGAAAAGTCCCATTGATTGTAATTTAGGTCCAGCTACTGTACTTACATATGAGGAAGAAAGGATACTCGTGAGATGGATAGGCTTTATGGCTGAAAAACATTTTCCTGTGACCAAAGAACAATTGCTTGATAGCGTCCAAAAAATAATATCTGAGAAAAATTTAGATTCCTGTCCGTTCACAAACAATCGGCCTGGGCAAAAGTGGTACTCTTCGTTTTTAAAAAGGCATCCAGATCTCTCTGAACGCACAGCGCAAAATTTAAGTAAAGCGAGAGATGAAGTCACAGAAGATGACATACTCCGTTGGTTTGAAGTAATTAAAGGTTACCTTGCAAATAAAGATTTGCTTGAAGTAATAAATGAccctgaaagaatttttaatactgATGAAAGCGCATTCTACTTACAACCAAAAGCGGGACGAGTTATAGTGCGCAAAGGTGAAAAAATGTCTATACAGCATCAGGAGATGAGAAAGAAAATTTAA
- Protein Sequence
- MAPRKDYTKEQMAKAIEEVRKGEKISVAATRYGVPRITLHNKITGKSPIDCNLGPATVLTYEEERILVRWIGFMAEKHFPVTKEQLLDSVQKIISEKNLDSCPFTNNRPGQKWYSSFLKRHPDLSERTAQNLSKARDEVTEDDILRWFEVIKGYLANKDLLEVINDPERIFNTDESAFYLQPKAGRVIVRKGEKMSIQHQEMRKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502030;
- 90% Identity
- iTF_01172283;
- 80% Identity
- -