Cnup056840.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catocala nupta
Gene Symbol
PGBD4
Assembly
GCA_963675205.1
Location
OY776108.1:9171623-9176951[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.3e-10 2.4e-07 32.1 0.0 2 37 776 811 775 813 0.91

Sequence Information

Coding Sequence
ATGGGCCATTTGCGAATAGTATGCAGGAAAAAGGAATTCGATCGCCGTATGACGTCGGATAGTTCAAACTCAAACGGTGCGCGGGGAAGGTCACGTAGAGGACACGCGGAAGGCGGGAAGCAGCGCAGcgaggcggcggcggcagcggctgCGACACAAGGCCGAACTAGCACCAGCGCAGGCGCGGCCCGCCACGCTGCCGGTGCGGCGCACTGGCTGCGCGAGCCGGCATCGGGTGACACCTCCGGGGAAGAACAGCACGCGTCTGATGATGGCAAGGAGCCAATGTACCAGATGTCTTTAGCAAAtGTAACAAGACGTCCTCGCGTACGCGGAGCGAGACGCGGTAGAGGTGTGCGTGTGCGAGGTGGCACAGGTTCCAGCGGCAGGGTGGTTGGGGGAGATGAGATGGTGGTGACACGTGGTCGCGGTGTACCAAGCCGGCGTGGTGGACGGCGCGCTGGCCTTGCACATCTCCCCATCCACCAAGAGCGACCTGGACCGCGAACTACTGACGAGCTTTCCATATTTGACATCGGAGACGTTCCGGTTGGCCGAGGTTTGGAGAACGCGCTCCATCCTAAGAGGATGCGCATATGGCAACCATCTAACCTGGCGCCCGCACCACAAACCACACCACCACCAACCGCCTCCACTAGCTCGTGTAGAGATGTGGAAATGGTGGTGGAGGTAGCATCAGTGACACCCGATGAAACATATTCGGTGCCCTCGCCAGCAGCGTTTATGCAATGTGGGAGTGAATCGGACACGCCGATTGGCTCACCACATCAGCGTCTTCCTCCTCCTCGCCCTCGCCAGAGTCTGCGCGATGCAGATATTACCCACGAGCTTAATTTCGgaAGCGAAGCAGACTCTGACGAGAGTGACGATGAGGACGTGGTGTCTCCATTCATCCCTAGGGTGATAAGGGCCGCAATGGAGACACCAATAGACGCTGATGTCGACCAGCCTTCGGCCGCGGACGATGTCCACATCCCGGAGCCCGCCAATATCCCTCCAACGGCAACGGACCGGCCTTGGAGTTTGTATGATTTTCAGTGGGAAGCGTTTCCGAATCCTCCGATTCCACCTGAATCGAGGCGGGAAACGTTTTCGGAAAGTAATGTTGGTCCGACTACTCCATGTGACGACCCGTATGACATTTTCGTTGCCATATGGGATCGGCAATTTATGGAGCACATTGCCTCGGAAACGAATAGATATGCTCAGCAGGTGGCAAACCATATGCTCATTAACCACAACCTCCATCCCAATAGCCGAATTACCAAGTGGTGGGATACGACGGCTGAcgaattatatgtttatttcgcCCTTATTATTGCGATGGGGGTTGTGGTTAAGACTCGTATAGAGGAGTATTGGAATGTCACCCCTGATATATTCTACACTCCCGGTTTTAGCGCACACATGTCTATAAATCGTTTTATATTGTTAAGTAGGTGTCTGCATTTCAATAATAACGAAGACATGTGTGCGCTAGAACTGGTCGGTTCCGAGGCCAAATTATTTAAGATACAGCCAGTTCTGTCACATTTGAATATGAAATTTCAGTCTATGTATACTCCAGGGCAAAATATTGCCTTGGACGAATCTCTTCTGCAGTGGAAAGGTTGGTTGGACATCAATCAGCTGATTCCCAATAAAGCTGCTGTGATAGGGATTAAAACTTATGAGATTTGTGAATCTCAAACCGGTTACCTCTGGCGGTTTGAGGTTCACGCTCATAAGAAATCTCCACCGCAGCAGTTGGAAGATCCATTAAAAGCATCCACGCCAGCAATTGTTTTAAGACTTATACATGGTCTTGAGAACAAGGGCTATACCTTGTGGATGGACAATTTCTACAATTCGCCATGTCTCGCTCGGCGCCTAAAGTCTATTGGCTTAGATTGTGTAGGGACTTTGCGTACAAATCGCAAGTTTGTACCACAGGCCCTGCACAATCTTACCAATAGAAATATGAGCCCGGGTCAAGTCACTGGTCTTTCCTCTGGGGACATCAATGTCATGGTATGGAGAGATAATAACAGGGTGTCTACTATCTCTACATACCATGGCAACGCTGCTGCGCCTATCAGAGGCTCCACCAAACCCATCGTGATATTGGATTACAATATCATGATGGGTGGGGTGGATAAGAAAGACCAGATGTTGGCTATGTACCCGATAGAAAGGAAGCGAACAAAGGTCTGGTACAAAAAACTATTTAGTAAAAAGGTGAAAAAGTTAGATTTGTACGTAATTAATAAGGGAAGCACTAGTTTATTAGACTGCTTCAACATGCCAAAGATACCGCAATATACCAAAGAACAAGTAGACAAAGCTTTAGAAGACATTAGTCAAGGTATATCAGTTCGTACAGCAGCCAAAAAATATGGAATACCTAGAGCaacattacaatttaaattgaaacaccCGGATAGCAAGAGTGAATTTGGACCAGAACCTTACTTGgctaaagaagaagaaaaatag
Protein Sequence
MGHLRIVCRKKEFDRRMTSDSSNSNGARGRSRRGHAEGGKQRSEAAAAAAATQGRTSTSAGAARHAAGAAHWLREPASGDTSGEEQHASDDGKEPMYQMSLANVTRRPRVRGARRGRGVRVRGGTGSSGRVVGGDEMVVTRGRGVPSRRGGRRAGLAHLPIHQERPGPRTTDELSIFDIGDVPVGRGLENALHPKRMRIWQPSNLAPAPQTTPPPTASTSSCRDVEMVVEVASVTPDETYSVPSPAAFMQCGSESDTPIGSPHQRLPPPRPRQSLRDADITHELNFGSEADSDESDDEDVVSPFIPRVIRAAMETPIDADVDQPSAADDVHIPEPANIPPTATDRPWSLYDFQWEAFPNPPIPPESRRETFSESNVGPTTPCDDPYDIFVAIWDRQFMEHIASETNRYAQQVANHMLINHNLHPNSRITKWWDTTADELYVYFALIIAMGVVVKTRIEEYWNVTPDIFYTPGFSAHMSINRFILLSRCLHFNNNEDMCALELVGSEAKLFKIQPVLSHLNMKFQSMYTPGQNIALDESLLQWKGWLDINQLIPNKAAVIGIKTYEICESQTGYLWRFEVHAHKKSPPQQLEDPLKASTPAIVLRLIHGLENKGYTLWMDNFYNSPCLARRLKSIGLDCVGTLRTNRKFVPQALHNLTNRNMSPGQVTGLSSGDINVMVWRDNNRVSTISTYHGNAAAPIRGSTKPIVILDYNIMMGGVDKKDQMLAMYPIERKRTKVWYKKLFSKKVKKLDLYVINKGSTSLLDCFNMPKIPQYTKEQVDKALEDISQGISVRTAAKKYGIPRATLQFKLKHPDSKSEFGPEPYLAKEEEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-